Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2089 ATGAATCCCACTACTAGTACCTCACACCATCAAACCGAAAATGTAAACTGTGCTTGTGAATTGACCAGCCACGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATACATCGGATTATGTGGCAACTCATCCGATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTAAGGAGGCTAGGAAGATACAGCTTTCTGGGAACTTTAGTAATCTATCAACGTTTAATGAGAGGCTGCAATTTATTGCAGAAGTTTGCATTTTTCATAGTATTGCCGAGGACAAGGTAATTTTTCCTGCAGTAGATGGAGAGCTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAATCAATTCAATGAGTTTAGGCGCCTGATTGAAAATATTCAAAGTGAAGGAGCTACTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCCAGAAAGCACTTTAGTTTCAAGAGACAACGGGAACTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGCGTCTTGCCATGGCTAGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATGCTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAGTAACGGTTTGTGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTCAAAGGCTCATTGACATTGAAGAAGACATTGTTCAACCATCTTGTTCCTGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAACTAGATCCCGAAACTAATGTTAGTGTTAAGAAGCCAGCCATACGAAATGTTCCAATGCCATGCAAAATTTGTGATGACCGTATTGCTTCAGAGAATGTTATCCAGCAAAAGTGCTGTAGTGATCAGTCCTGCCGAGTTCCAGCTTTAGGGGTAAACATTAAGAATCTGGGGTTGAGTTCTATTTTCACATCCAAGTGTACGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGACAGTTCTTCTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAGGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGCACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAACGCTGAAGATGATATAGTATTTCCAGCACTTGAATCCAAGGAGGCATTGCATAATGTGAGTCACTCCTATACACTTGACCATAAGCAGGAGGAAAAACTATTTGAGGACATTTCATGTGTTCTCTCAGAGATTTCACTTCTACATGAAAGTCTGCATGCGGTTCCGTTGGATGAGAGTTTTTCTAGGAGTGATGTTGTCTTTGTGAATGGGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTTCCTTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGTATCATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCTCTCACTCAGGATGAACAGAATACTTTGATGGATACGTGGAAGCAGGCCACGAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTTCTTTAAAGGGTGAAACATCTGAAGCTAGTGTTGCTGAAAAAGATTCTGGCCTTATTGAGAGCTTGGATCAGAATGACCAAATGTTCAAACCTGGATGGAAAGATATTTTTCGCATGAACCAAAATGAGCTTGAATCAGAAATCAGAAAGGTGTATCAGGACTCGACTCTTGATCCACGGAGAAAAGCATATCTAGTGCAGAATCTTATGACCAGTCGTTGGATTGCTGCACAGCAAAAACTACCTCAAGCAAATGTCGAAGAAAATTCCAATGGTGAAGATGTAGTAGGACGAACACCATCTTTTCGCTGTGCCGAGAACAAAGTCTTTGGGTGTGAACACTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCGGAGATGATGTGTATGAACTGTCTAACAGTTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATATTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGTCTGTGTATCATTGCCCGTTTTGTAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGGTTTGCAATTGTTGCCTTGGGATAAAGCTGGAAAGCCATAAGTGTCTGGAGAAAAGTTTAGAGACGAACTGTCCCATCTGTTGTGATTTCTTATTCACATCCAGTGCAACAGTCAGACCGCTACCTTGTGGTCATTACATGCATTCAGCCTGCTTTCAGGCATACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCCTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCCGCTGAGGAGCTACCAGAAGAGTACAGGGATCGTTGCCAGGACGTATTGTGCAATGACTGTGAACGAAAAGGCACATCAAGGTTCCATTGGCTGTACCATAAATGTGGGTTTTGTGGATCATACAACACACGGGTTATCAAGAATGATATCCCACATGCCGTTGCTGGCTGCCCATCTTCGAATCAATGA 2976 42.07 MNPTTSTSHHQTENVNCACELTSHGKRKYLESSSDTSDYVATHPINEILFWHNAIKRELNDIAKEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEENQFNEFRRLIENIQSEGATSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLKNMQLAAPAKDAALVTLFSGWACKARSNGLCLSSRAVGCCAVQRLIDIEEDIVQPSCSCAPALIAREGPKLDPETNVSVKKPAIRNVPMPCKICDDRIASENVIQQKCCSDQSCRVPALGVNIKNLGLSSIFTSKCTRSLSPSSCAPSLNSSLFSWETDSSSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHAVPLDESFSRSDVVFVNGVGKDCNRKYNELATKLQGMCKSIRVSLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSSLKGETSEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEENSNGEDVVGRTPSFRCAENKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTVQPVGPICTTPSCNGLSMAKYYCNICKFFDDERSVYHCPFCNLCRVGKGLGIDFFHCMVCNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDVLCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDIPHAVAGCPSSNQ 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31605791 31617039 - Sed0007904.2 Sed12g2089 733045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2089 991 Gene3D nmb1532 protein domain like 46 193 - -
Sed12g2089 991 Pfam Ring finger domain 868 910 IPR001841 -
Sed12g2089 991 Pfam Hemerythrin HHE cation binding domain 44 177 IPR012312 -
Sed12g2089 991 Pfam Hemerythrin HHE cation binding domain 393 556 IPR012312 -
Sed12g2089 991 Pfam Zinc-ribbon 916 973 IPR039512 -
Sed12g2089 991 SUPERFAMILY Zinc hairpin stack 806 862 IPR037275 -
Sed12g2089 991 CDD Hr-like 47 175 - -
Sed12g2089 991 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 428 975 - -
Sed12g2089 991 Gene3D - 940 980 - -
Sed12g2089 991 CDD RING-H2_Pirh2-like 868 911 - -
Sed12g2089 991 ProSiteProfiles Zinc finger RING-type profile. 869 911 IPR001841 -
Sed12g2089 991 ProSiteProfiles Zinc finger CTCHY-type profile. 805 868 IPR017921 -
Sed12g2089 991 FunFam Zinc finger protein-related isoform 1 864 913 - -
Sed12g2089 991 Gene3D nmb1532 protein domain like 388 619 - -
Sed12g2089 991 SUPERFAMILY CHY zinc finger-like 734 796 IPR037274 GO:0008270(InterPro)
Sed12g2089 991 Coils Coil 117 137 - -
Sed12g2089 991 SUPERFAMILY RING/U-box 868 914 - -
Sed12g2089 991 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 862 913 IPR013083 -
Sed12g2089 991 Pfam CHY zinc finger 740 808 IPR008913 GO:0008270(InterPro)
Sed12g2089 991 ProSiteProfiles Zinc finger CHY-type profile. 733 802 IPR008913 GO:0008270(InterPro)
Sed12g2089 991 SMART ring_2 869 910 IPR001841 -
Sed12g2089 991 CDD Hr-like 395 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1906 Sed-Chr6:43421790 Sed12g2089 Sed-Chr12:31605791 0.00E+00 dispersed
Sed12g2089 Sed-Chr12:31605791 Sed14g0367 Sed-Chr14:3844489 3.50E-41 dispersed
Sed12g2088 Sed-Chr12:31605791 Sed12g2089 Sed-Chr12:31605791 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2089 K16276 - csv:101215023 1862.04