Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2099 ATGGCTGAGCCCGATCCATCGAAGAAAGTTGCCGATCGATATTTAAAGCGTGAGATTCTCGGAGAAGGTACCTATGGTGTTGTTTATAAGGCCATTGATACTCAGACAGGTCAGATTGTTGCAATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGGGTAAATTTTACGGCTCTTCGAGAAATCAAGCTTCTAAAAGAGCTCAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCATAAAGAAAATTTGCATCTTGTTTTTGAATTTATGGAGACGGACCTCGAAGCTGTTATACGCGATCGGAACATATTTCTTTCCCCAGCTGACATAAAATCGTACCTTCAAATGACGTTGAAAGGCCTTGCCTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCTAATGGTCAACTAAAACTTGCAGATTTTGGTTTGGCTCGTCTATTTGGGAGTCCAGATCGCAGGTTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCAGAGCTATTGTTTGGCACCAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACGTCTTCTCAGTGGTCTGATATGTTATACCTTCCTGATTACGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCACTGTTTCCTATGGCTAGTGATGACACACTGGATCTCTTATCGAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCATTTCCCACTGATCCTTGTAAGCTTCCAAGGCCTGCTGCTAAGCGCGAACCTATGAACTCTAGAGTTATTGATTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCCAGAAGAGTAATGCCTGACCGTGAGGCTTTTGAAGAAAATGCACAACGAGCTGATAAGCTTGATAACCATGTTAATGAGGTTCAAGACCTAGTTGCTGGAAATACAAGCAGAAATGAAGCAGTGCCCATGTCGTTGGATTTTTCTATATTTGGTGGAAAACCTCCAAACAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1251 41.25 MAEPDPSKKVADRYLKREILGEGTYGVVYKAIDTQTGQIVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKENLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARLFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTSSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPFPTDPCKLPRPAAKREPMNSRVIDLNSNEGPTVLSPPRKSRRVMPDREAFEENAQRADKLDNHVNEVQDLVAGNTSRNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31713756 31719371 - Sed0001871.1 Sed12g2099 733055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2099 416 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Sed12g2099 416 SMART serkin_6 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2099 416 MobiDBLite consensus disorder prediction 321 342 - -
Sed12g2099 416 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Sed12g2099 416 MobiDBLite consensus disorder prediction 386 416 - -
Sed12g2099 416 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2099 416 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524(InterPro)
Sed12g2099 416 PANTHER CELL DIVISION PROTEIN KINASE 14 294 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Sed12g2099 416 MobiDBLite consensus disorder prediction 401 416 - -
Sed12g2099 416 FunFam Cyclin-dependent kinase D-1 5 94 - -
Sed12g2099 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2099 416 Gene3D Phosphorylase Kinase; domain 1 6 94 - -
Sed12g2099 416 CDD STKc_CDK7 13 307 IPR037770 GO:0005675(InterPro)|GO:0008353(InterPro)|GO:0070985(InterPro)
Sed12g2099 416 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Sed12g2099 416 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2099 Sed-Chr12:31713756 Sed04g0029 Sed-Chr4:163933 4.50E-67 dispersed
Sed12g2099 Sed-Chr12:31713756 Sed12g2100 Sed-Chr12:31713756 1.50E-190 tandem
Sed12g2099 Sed-Chr12:31713756 Sed08g0384 Sed-Chr8:2325240 2.90E-231 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80027 PF00069 Pkinase 9.80E-73 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2099 K02202 - csv:101217645 786.563