Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2100 ATGGAGACGGACCTCGAAGCTGTTATACGCGATCGGAACATATTTCTTTCCCCAGCTGACATAAAATCGTACCTTCAAATGACGTTGAAAGGCCTTGCCTATTGCCACAAGAAATGGGTTTTACATAGGGATATGAAGCCAAATAATTTGTTGATAGGACCTAATGGTCAACTAAAACTTGCAGATTTTGGTTTGGCTCGTCTATTTGGGAGTCCAGATCGCAGGTTTACTCACCAGGTGTTTGCCCGATGGTACAGAGCACCAGAGCTATTGTTTGGCACCAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTAGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATCTTTGCAGCTTTTGGAACTCCTACGTCTTCTCAGTGGTCTGATATGTTATACCTTCCTGATTACGTGGAGTTCCAATATGTTCCTGCACCTCCTCTACGATCACTGTTTCCTATGGCTAGTGATGACACACTGGATCTCTTATCGAAGATGTTTGCTTATGATCCAAAATCTAGAATTTCCATTCAGCAAGCATTGGAGCATAGGTACTTCACATCTGCACCATTTCCCACTGATCCTTGTAAGCTTCCAAGGCCTGCTGCTAAGCGCGAACCTATGAACTCTAGAGTTATTGATTTAAATTCAAATGAGGGTCCTACTGTCCTCTCACCTCCAAGAAAGTCCAGAAGAGTAATGCCTGACCGTGAGGCTTTTGAAGAAAATGCACAACGAGCTGATAAGCTTGATAACCATGTTAATGAGGTTCAAGACCTAGTTGCTGGAAATACAAGCAGAAATGAAGCAGTGCCCATGTCGTTGGATTTTTCTATATTTGGTGGAAAACCTCCAAACAGACCAACAATTAACAGTGCTGACAGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 975 42.26 METDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGPNGQLKLADFGLARLFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTSSQWSDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRISIQQALEHRYFTSAPFPTDPCKLPRPAAKREPMNSRVIDLNSNEGPTVLSPPRKSRRVMPDREAFEENAQRADKLDNHVNEVQDLVAGNTSRNEAVPMSLDFSIFGGKPPNRPTINSADRSHLKRKLDLEFQQ 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31713756 31719371 - Sed0001871.2 Sed12g2100 733056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2100 324 PANTHER CELL DIVISION PROTEIN KINASE 1 202 IPR050108 GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0045944(PANTHER)|GO:0070985(PANTHER)
Sed12g2100 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2100 324 SUPERFAMILY Protein kinase-like (PK-like) 2 209 IPR011009 -
Sed12g2100 324 SMART serkin_6 1 202 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2100 324 Pfam Protein kinase domain 3 202 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2100 324 Gene3D Transferase(Phosphotransferase) domain 1 3 218 - -
Sed12g2100 324 MobiDBLite consensus disorder prediction 294 324 - -
Sed12g2100 324 MobiDBLite consensus disorder prediction 229 250 - -
Sed12g2100 324 ProSiteProfiles Protein kinase domain profile. 1 202 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2100 324 FunFam Putative cyclin-dependent kinase 7 3 218 - -
Sed12g2100 324 MobiDBLite consensus disorder prediction 309 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0384 Sed-Chr8:2325240 Sed12g2100 Sed-Chr12:31713756 5.20E-180 dispersed
Sed12g2100 Sed-Chr12:31713756 Sed06g1993 Sed-Chr6:43997911 6.10E-51 dispersed
Sed12g2099 Sed-Chr12:31713756 Sed12g2100 Sed-Chr12:31713756 1.50E-190 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80028 PF00069 Pkinase 1.40E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2100 K02202 - csv:101217645 618.231