Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2104 | ATGTCTCGCCGCACCGGTGACGACGGCGGCGACGACGAGAAGCTTTCCGCCGGCGAGGAAGACGGTGAAGACGATGTGATTGATGAGGACATGGAAGCCCTCAGGGGAGCCTGTAGGCTTGCCGGAGTCAACCCTGAGGAGTATATGAACAATCCGTCCTCGTCGCTTACCGCCGGAGAAGATTCTGATGATATTGATGATTTCGAGCTTGTTCGAAATATTCGGAAACAGTTCTCGATTTCGGACGATGAGCAGCCGTTGTGTGTTCTCCCAACGGCGTCCCCCGACGAGGAGGAGGAAGACGATTTCGAGACGCTGCGTCGGATTCAGCAGCGCTTTGGGGCGTATGAAAGTGATGCTTTCAATAAACTCGATCATTCTTGTGACTTTAATGGCCCTCTGGAGATGGATTCCAACAACACAGCTATTGAGCGACAAACATCCTCAGAAAGGTCATCTATGATAGTCTTTGGAAAGGGAAGCTTGCCAAAGGCGGCATTGTCATTTATTGATGCCATCAAGAAGAATAGGTCTCAACAAAAGTTTATTCGCACGAAAATGATTCACCTTGAAGCTAGAATGGAGGAGAACAAAAAGCTTAGAAAACGTTTCAAAGTTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAACTTGTGCACTATCTCAGATGATCGATCCTCGAGTCCAGTTATTGTCAACTGCAAAACCACATGCTAAGGATTCATCAAAGAAGGACAAGCGATTACCTGCAATGTGTTATGGCCCAACTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGACAAAGTTTCCCCCTTCCGTAGATCGAAAAAGATGGTCCAATGTAGAAAGGGAGAGTCTAGAGAAGGGAATAAGGCAACAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAACTTAGTTGGCTACAAGGATTTTCAGAAGATTCAGATAATCTGGATGGCATTCTTGCATCGATAAAAGACTTTGACTTTACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGAGAAATTGGCTTCTATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTAAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGATGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGACATAGCAGTTTCATTGGGTACAAACAGAACGCCTTTTCAGTGCTTGTCTCGGTACCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACTAAAGATGAGGATGAGAAACTTCGATCCGCTGTTGCTATTTTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGTACACAGTGCTCTAATAGGTGGAAAAAAACCCTCGACCCAGCTAAGTCAAAAAGAGGCCATTTCACTCCAGATGAAGACAACCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAAAAAGCATATTTTTTACCCGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTCCAATTGCTTAGATCCTTCCTTGAGAAGATGTCCATGGACAGAGGAGGAAGATTTAAGGCTGGAGACAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATCTGTGACATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGACGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAAAAGGCCGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACCGACTTTCGACCTACACCAAATACAAATTTATTATGTAATGCTGATGATCCAAAACCTGCCGCGAAAAGAAATGTGAAGACGAGAAGGATGCCAGTGTCAAGGAATGAAGAGAGTGCTACTGGTGACGCTCCAAAGAAGAGGAAGTCAAGTAACCAGAGGAAACAAGCTGATGCAGCTGCTCAGGTGGGTATTGCGCCTGAGGAGGTTAAATCTACAAAACCTCAAAGAAAACGAGCTTATACCGCAAAGACTAAGACGAAAGGGGTTTCGGAGCTACCTTCTAACAGCGAGAGATGTGCTGAACAGAATTTGGACACTCAAAGCCACGTGGTGCAGCTAGATAGTAAGGAATCCGAGATGACCAATAATGACTGTGTCGAGACTGTTGATGAGAATGGTATGGAAGAATGTGGAAATAAAGTTTCAGAGAATCCTTCTAAAAGAGATGTATGTTTTTCAGGACAAGAAAATCAGAACTCTACCGGATCTTCTGGAGTGTCGGCATTGTCGGAGATGACTAATGACATGGATGAGTTCTTCAATCCCTTTATCCTTCCAGATACAGCACAGTTGGTCCATTCTACTGGGGATGATATTATGGAAAGGAAAGGGGAGGAGAGTGTTGCAGACAAAGATCTCGATGATAGTAACAGTTACTCATTACCACGCTGTTGCTCAGAATTCAGGACAGCTGACAGCGAAGGCGTCGACAGTTATTCTGTTGGTGAACTTACAGACAGAGACGATAGGATTTGCAAGTCCGAAAGCAGAAGGAAAAGAAATAGTAAAACATCAAATAAGAGCCAGGATTCTTTGGTGGGTTCTAGTCAACAAGTCGAGCTAGGGACAAAAACGTCCCCACGTCATCATAATCAATCAAAGAAGAGAAAAAATAACAGTACAAATACGAGTCCATTTGAAACATCAGAGGCAGTTGAAGAGGTCGACGACTGCACTCTCCTCGGTTTTCTGCAAAAGAGATTGAAGAGGGCAACTAGTCATGACATGAAAGACGATAGCACACCTCTAGAAATTGATAATGATCATAATGATCCCACCATTGCCTGTCTACTAAAGGATAAATCGAAGAAGAAAAGGCATCTAGGGTCGCCCAGTGGTGGAGAGCGTAAAACTAACTAG | 2991 | 43.9 | MSRRTGDDGGDDEKLSAGEEDGEDDVIDEDMEALRGACRLAGVNPEEYMNNPSSSLTAGEDSDDIDDFELVRNIRKQFSISDDEQPLCVLPTASPDEEEEDDFETLRRIQQRFGAYESDAFNKLDHSCDFNGPLEMDSNNTAIERQTSSERSSMIVFGKGSLPKAALSFIDAIKKNRSQQKFIRTKMIHLEARMEENKKLRKRFKVLKDFQGSCRRKTTCALSQMIDPRVQLLSTAKPHAKDSSKKDKRLPAMCYGPTENSHVACYRMALTKFPPSVDRKRWSNVERESLEKGIRQQFQEMVLQISVDQLSWLQGFSEDSDNLDGILASIKDFDFTPEKIREFLPKVNWEKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSDDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVAIFGVGDWQAVASTLEGRAGTQCSNRWKKTLDPAKSKRGHFTPDEDNRLKIAVLLFGPKNWNKKAYFLPGRNQVQCRERWSNCLDPSLRRCPWTEEEDLRLETAIQEHGYSWAKVAASVTSRTDNECRRRWKTLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPTPNTNLLCNADDPKPAAKRNVKTRRMPVSRNEESATGDAPKKRKSSNQRKQADAAAQVGIAPEEVKSTKPQRKRAYTAKTKTKGVSELPSNSERCAEQNLDTQSHVVQLDSKESEMTNNDCVETVDENGMEECGNKVSENPSKRDVCFSGQENQNSTGSSGVSALSEMTNDMDEFFNPFILPDTAQLVHSTGDDIMERKGEESVADKDLDDSNSYSLPRCCSEFRTADSEGVDSYSVGELTDRDDRICKSESRRKRNSKTSNKSQDSLVGSSQQVELGTKTSPRHHNQSKKRKNNSTNTSPFETSEAVEEVDDCTLLGFLQKRLKRATSHDMKDDSTPLEIDNDHNDPTIACLLKDKSKKKRHLGSPSGGERKTN | 996 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 31737511 | 31747834 | - | Sed0017978.1 | Sed12g2104 | 733060 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2104 | 996 | ProSiteProfiles | Myb-like domain profile. | 480 | 531 | IPR001005 | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 13 | 28 | - | - | |
Sed12g2104 | 996 | CDD | SANT | 488 | 529 | IPR001005 | - | |
Sed12g2104 | 996 | Gene3D | - | 539 | 585 | - | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 883 | 903 | - | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 636 | 670 | - | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-like domain profile. | 274 | 373 | IPR001005 | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 867 | 882 | - | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 946 | 963 | - | - | |
Sed12g2104 | 996 | Gene3D | - | 482 | 536 | - | - | |
Sed12g2104 | 996 | CDD | SANT | 434 | 478 | IPR001005 | - | |
Sed12g2104 | 996 | SUPERFAMILY | Homeodomain-like | 484 | 578 | IPR009057 | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-like domain profile. | 374 | 426 | IPR001005 | - | |
Sed12g2104 | 996 | SUPERFAMILY | Homeodomain-like | 355 | 423 | IPR009057 | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 532 | 586 | IPR017930 | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 946 | 996 | - | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 867 | 930 | - | - | |
Sed12g2104 | 996 | CDD | SANT | 539 | 582 | IPR001005 | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 427 | 482 | IPR017930 | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-like domain profile. | 427 | 478 | IPR001005 | - | |
Sed12g2104 | 996 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 22 | 983 | IPR051575 | GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER) | |
Sed12g2104 | 996 | Gene3D | - | 431 | 481 | - | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 610 | 716 | - | - | |
Sed12g2104 | 996 | SUPERFAMILY | Homeodomain-like | 411 | 480 | IPR009057 | - | |
Sed12g2104 | 996 | Gene3D | - | 376 | 426 | - | - | |
Sed12g2104 | 996 | Pfam | Myb-like DNA-binding domain | 485 | 531 | IPR001005 | - | |
Sed12g2104 | 996 | Pfam | Myb-like DNA-binding domain | 379 | 424 | IPR001005 | - | |
Sed12g2104 | 996 | Pfam | Myb-like DNA-binding domain | 432 | 478 | IPR001005 | - | |
Sed12g2104 | 996 | Pfam | Myb-like DNA-binding domain | 537 | 581 | IPR001005 | - | |
Sed12g2104 | 996 | SMART | sant | 484 | 533 | IPR001005 | - | |
Sed12g2104 | 996 | SMART | sant | 278 | 375 | IPR001005 | - | |
Sed12g2104 | 996 | SMART | sant | 378 | 428 | IPR001005 | - | |
Sed12g2104 | 996 | SMART | sant | 536 | 584 | IPR001005 | - | |
Sed12g2104 | 996 | SMART | sant | 431 | 480 | IPR001005 | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 484 | 531 | IPR017930 | - | |
Sed12g2104 | 996 | ProSiteProfiles | SANT domain profile. | 535 | 586 | IPR017884 | - | |
Sed12g2104 | 996 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed12g2104 | 996 | ProSiteProfiles | Myb-like domain profile. | 532 | 582 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g1258 | Sed-Chr8:26123528 | Sed12g2104 | Sed-Chr12:31737511 | 7.40E-10 | dispersed | |
Sed12g2104 | Sed-Chr12:31737511 | Sed14g0670 | Sed-Chr14:6740812 | 2.30E-16 | dispersed | |
Sed08g0391 | Sed-Chr8:2356726 | Sed12g2104 | Sed-Chr12:31737511 | 2.80E-42 | transposed | |
Sed12g2104 | Sed-Chr12:31737511 | Sed08g0390 | Sed-Chr8:2353563 | 3.70E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40281 | PF00249 | Myb_DNA-binding | 1.20E-07 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2104 | K09422 | - | csv:101216287 | 1350.88 |