Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2104 ATGTCTCGCCGCACCGGTGACGACGGCGGCGACGACGAGAAGCTTTCCGCCGGCGAGGAAGACGGTGAAGACGATGTGATTGATGAGGACATGGAAGCCCTCAGGGGAGCCTGTAGGCTTGCCGGAGTCAACCCTGAGGAGTATATGAACAATCCGTCCTCGTCGCTTACCGCCGGAGAAGATTCTGATGATATTGATGATTTCGAGCTTGTTCGAAATATTCGGAAACAGTTCTCGATTTCGGACGATGAGCAGCCGTTGTGTGTTCTCCCAACGGCGTCCCCCGACGAGGAGGAGGAAGACGATTTCGAGACGCTGCGTCGGATTCAGCAGCGCTTTGGGGCGTATGAAAGTGATGCTTTCAATAAACTCGATCATTCTTGTGACTTTAATGGCCCTCTGGAGATGGATTCCAACAACACAGCTATTGAGCGACAAACATCCTCAGAAAGGTCATCTATGATAGTCTTTGGAAAGGGAAGCTTGCCAAAGGCGGCATTGTCATTTATTGATGCCATCAAGAAGAATAGGTCTCAACAAAAGTTTATTCGCACGAAAATGATTCACCTTGAAGCTAGAATGGAGGAGAACAAAAAGCTTAGAAAACGTTTCAAAGTTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAACTTGTGCACTATCTCAGATGATCGATCCTCGAGTCCAGTTATTGTCAACTGCAAAACCACATGCTAAGGATTCATCAAAGAAGGACAAGCGATTACCTGCAATGTGTTATGGCCCAACTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGACAAAGTTTCCCCCTTCCGTAGATCGAAAAAGATGGTCCAATGTAGAAAGGGAGAGTCTAGAGAAGGGAATAAGGCAACAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAACTTAGTTGGCTACAAGGATTTTCAGAAGATTCAGATAATCTGGATGGCATTCTTGCATCGATAAAAGACTTTGACTTTACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGAGAAATTGGCTTCTATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTAAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGATGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGACATAGCAGTTTCATTGGGTACAAACAGAACGCCTTTTCAGTGCTTGTCTCGGTACCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACTAAAGATGAGGATGAGAAACTTCGATCCGCTGTTGCTATTTTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGTACACAGTGCTCTAATAGGTGGAAAAAAACCCTCGACCCAGCTAAGTCAAAAAGAGGCCATTTCACTCCAGATGAAGACAACCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAAAAAGCATATTTTTTACCCGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTCCAATTGCTTAGATCCTTCCTTGAGAAGATGTCCATGGACAGAGGAGGAAGATTTAAGGCTGGAGACAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATCTGTGACATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGACGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAAAAGGCCGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACCGACTTTCGACCTACACCAAATACAAATTTATTATGTAATGCTGATGATCCAAAACCTGCCGCGAAAAGAAATGTGAAGACGAGAAGGATGCCAGTGTCAAGGAATGAAGAGAGTGCTACTGGTGACGCTCCAAAGAAGAGGAAGTCAAGTAACCAGAGGAAACAAGCTGATGCAGCTGCTCAGGTGGGTATTGCGCCTGAGGAGGTTAAATCTACAAAACCTCAAAGAAAACGAGCTTATACCGCAAAGACTAAGACGAAAGGGGTTTCGGAGCTACCTTCTAACAGCGAGAGATGTGCTGAACAGAATTTGGACACTCAAAGCCACGTGGTGCAGCTAGATAGTAAGGAATCCGAGATGACCAATAATGACTGTGTCGAGACTGTTGATGAGAATGGTATGGAAGAATGTGGAAATAAAGTTTCAGAGAATCCTTCTAAAAGAGATGTATGTTTTTCAGGACAAGAAAATCAGAACTCTACCGGATCTTCTGGAGTGTCGGCATTGTCGGAGATGACTAATGACATGGATGAGTTCTTCAATCCCTTTATCCTTCCAGATACAGCACAGTTGGTCCATTCTACTGGGGATGATATTATGGAAAGGAAAGGGGAGGAGAGTGTTGCAGACAAAGATCTCGATGATAGTAACAGTTACTCATTACCACGCTGTTGCTCAGAATTCAGGACAGCTGACAGCGAAGGCGTCGACAGTTATTCTGTTGGTGAACTTACAGACAGAGACGATAGGATTTGCAAGTCCGAAAGCAGAAGGAAAAGAAATAGTAAAACATCAAATAAGAGCCAGGATTCTTTGGTGGGTTCTAGTCAACAAGTCGAGCTAGGGACAAAAACGTCCCCACGTCATCATAATCAATCAAAGAAGAGAAAAAATAACAGTACAAATACGAGTCCATTTGAAACATCAGAGGCAGTTGAAGAGGTCGACGACTGCACTCTCCTCGGTTTTCTGCAAAAGAGATTGAAGAGGGCAACTAGTCATGACATGAAAGACGATAGCACACCTCTAGAAATTGATAATGATCATAATGATCCCACCATTGCCTGTCTACTAAAGGATAAATCGAAGAAGAAAAGGCATCTAGGGTCGCCCAGTGGTGGAGAGCGTAAAACTAACTAG 2991 43.9 MSRRTGDDGGDDEKLSAGEEDGEDDVIDEDMEALRGACRLAGVNPEEYMNNPSSSLTAGEDSDDIDDFELVRNIRKQFSISDDEQPLCVLPTASPDEEEEDDFETLRRIQQRFGAYESDAFNKLDHSCDFNGPLEMDSNNTAIERQTSSERSSMIVFGKGSLPKAALSFIDAIKKNRSQQKFIRTKMIHLEARMEENKKLRKRFKVLKDFQGSCRRKTTCALSQMIDPRVQLLSTAKPHAKDSSKKDKRLPAMCYGPTENSHVACYRMALTKFPPSVDRKRWSNVERESLEKGIRQQFQEMVLQISVDQLSWLQGFSEDSDNLDGILASIKDFDFTPEKIREFLPKVNWEKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSDDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVAIFGVGDWQAVASTLEGRAGTQCSNRWKKTLDPAKSKRGHFTPDEDNRLKIAVLLFGPKNWNKKAYFLPGRNQVQCRERWSNCLDPSLRRCPWTEEEDLRLETAIQEHGYSWAKVAASVTSRTDNECRRRWKTLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPTPNTNLLCNADDPKPAAKRNVKTRRMPVSRNEESATGDAPKKRKSSNQRKQADAAAQVGIAPEEVKSTKPQRKRAYTAKTKTKGVSELPSNSERCAEQNLDTQSHVVQLDSKESEMTNNDCVETVDENGMEECGNKVSENPSKRDVCFSGQENQNSTGSSGVSALSEMTNDMDEFFNPFILPDTAQLVHSTGDDIMERKGEESVADKDLDDSNSYSLPRCCSEFRTADSEGVDSYSVGELTDRDDRICKSESRRKRNSKTSNKSQDSLVGSSQQVELGTKTSPRHHNQSKKRKNNSTNTSPFETSEAVEEVDDCTLLGFLQKRLKRATSHDMKDDSTPLEIDNDHNDPTIACLLKDKSKKKRHLGSPSGGERKTN 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31737511 31747834 - Sed0017978.1 Sed12g2104 733060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 480 531 IPR001005 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 13 28 - -
Sed12g2104 996 CDD SANT 488 529 IPR001005 -
Sed12g2104 996 Gene3D - 539 585 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 883 903 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 636 670 - -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 274 373 IPR001005 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 867 882 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 946 963 - -
Sed12g2104 996 Gene3D - 482 536 - -
Sed12g2104 996 CDD SANT 434 478 IPR001005 -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 484 578 IPR009057 -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 374 426 IPR001005 -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 355 423 IPR009057 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 586 IPR017930 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 946 996 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 867 930 - -
Sed12g2104 996 CDD SANT 539 582 IPR001005 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 482 IPR017930 -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 427 478 IPR001005 -
Sed12g2104 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 22 983 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Sed12g2104 996 Gene3D - 431 481 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 610 716 - -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 411 480 IPR009057 -
Sed12g2104 996 Gene3D - 376 426 - -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 485 531 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 379 424 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 432 478 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 537 581 IPR001005 -
Sed12g2104 996 SMART sant 484 533 IPR001005 -
Sed12g2104 996 SMART sant 278 375 IPR001005 -
Sed12g2104 996 SMART sant 378 428 IPR001005 -
Sed12g2104 996 SMART sant 536 584 IPR001005 -
Sed12g2104 996 SMART sant 431 480 IPR001005 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 484 531 IPR017930 -
Sed12g2104 996 ProSiteProfiles SANT domain profile. 535 586 IPR017884 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 1 28 - -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 532 582 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2104 K09422 - - csv:101216287 1350.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1258 Sed-Chr8:26123528 Sed12g2104 Sed-Chr12:31737511 7.40E-10 dispersed
Sed12g2104 Sed-Chr12:31737511 Sed14g0670 Sed-Chr14:6740812 2.30E-16 dispersed
Sed08g0391 Sed-Chr8:2356726 Sed12g2104 Sed-Chr12:31737511 2.80E-42 transposed
Sed12g2104 Sed-Chr12:31737511 Sed08g0390 Sed-Chr8:2353563 3.70E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g1258 . 1 818 MYB-Related Transcription Factor Family AT1G09770 75.7 0.0e+00 1178.7
Sed12g2104 . 161 627 MYB-Related Transcription Factor Family AT3G18100 54.1 2.5e-147 520.4
Sed12g2104 . 161 627 MYB-Related Transcription Factor Family AT3G18100 54.1 2.5e-147 520.4
Sed08g1258 . 1 818 MYB-Related Transcription Factor Family AT1G09770 75.7 0.0e+00 1178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40281 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Sed TF