Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2104 ATGTCTCGCCGCACCGGTGACGACGGCGGCGACGACGAGAAGCTTTCCGCCGGCGAGGAAGACGGTGAAGACGATGTGATTGATGAGGACATGGAAGCCCTCAGGGGAGCCTGTAGGCTTGCCGGAGTCAACCCTGAGGAGTATATGAACAATCCGTCCTCGTCGCTTACCGCCGGAGAAGATTCTGATGATATTGATGATTTCGAGCTTGTTCGAAATATTCGGAAACAGTTCTCGATTTCGGACGATGAGCAGCCGTTGTGTGTTCTCCCAACGGCGTCCCCCGACGAGGAGGAGGAAGACGATTTCGAGACGCTGCGTCGGATTCAGCAGCGCTTTGGGGCGTATGAAAGTGATGCTTTCAATAAACTCGATCATTCTTGTGACTTTAATGGCCCTCTGGAGATGGATTCCAACAACACAGCTATTGAGCGACAAACATCCTCAGAAAGGTCATCTATGATAGTCTTTGGAAAGGGAAGCTTGCCAAAGGCGGCATTGTCATTTATTGATGCCATCAAGAAGAATAGGTCTCAACAAAAGTTTATTCGCACGAAAATGATTCACCTTGAAGCTAGAATGGAGGAGAACAAAAAGCTTAGAAAACGTTTCAAAGTTCTCAAAGATTTCCAGGGTTCATGTAGAAGAAAAACAACTTGTGCACTATCTCAGATGATCGATCCTCGAGTCCAGTTATTGTCAACTGCAAAACCACATGCTAAGGATTCATCAAAGAAGGACAAGCGATTACCTGCAATGTGTTATGGCCCAACTGAGAATTCTCATGTTGCATGCTACAGAATGGCATTGACAAAGTTTCCCCCTTCCGTAGATCGAAAAAGATGGTCCAATGTAGAAAGGGAGAGTCTAGAGAAGGGAATAAGGCAACAATTTCAAGAGATGGTGCTTCAGATTTCAGTGGATCAACTTAGTTGGCTACAAGGATTTTCAGAAGATTCAGATAATCTGGATGGCATTCTTGCATCGATAAAAGACTTTGACTTTACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGAGAAATTGGCTTCTATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCAAGGTGGTTAAATTTTGAAGACCCCCTAATTAATCGGAATCCATGGACTACAAGTGATGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATCGACATAGCAGTTTCATTGGGTACAAACAGAACGCCTTTTCAGTGCTTGTCTCGGTACCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACTAAAGATGAGGATGAGAAACTTCGATCCGCTGTTGCTATTTTTGGTGTGGGAGATTGGCAGGCAGTAGCTTCTACTTTGGAAGGACGAGCTGGTACACAGTGCTCTAATAGGTGGAAAAAAACCCTCGACCCAGCTAAGTCAAAAAGAGGCCATTTCACTCCAGATGAAGACAACCGCTTGAAAATTGCTGTACTGCTTTTTGGGCCTAAAAATTGGAACAAAAAAGCATATTTTTTACCCGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTCCAATTGCTTAGATCCTTCCTTGAGAAGATGTCCATGGACAGAGGAGGAAGATTTAAGGCTGGAGACAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATCTGTGACATCACGTACAGATAATGAGTGCCGGAGGAGATGGAAGACGTTATTTCCCAATGAAGTTCCTTTGCTCCAGGAAGCTAGAAAGATTCAAAAGGCCGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACCGACTTTCGACCTACACCAAATACAAATTTATTATGTAATGCTGATGATCCAAAACCTGCCGCGAAAAGAAATGTGAAGACGAGAAGGATGCCAGTGTCAAGGAATGAAGAGAGTGCTACTGGTGACGCTCCAAAGAAGAGGAAGTCAAGTAACCAGAGGAAACAAGCTGATGCAGCTGCTCAGGTGGGTATTGCGCCTGAGGAGGTTAAATCTACAAAACCTCAAAGAAAACGAGCTTATACCGCAAAGACTAAGACGAAAGGGGTTTCGGAGCTACCTTCTAACAGCGAGAGATGTGCTGAACAGAATTTGGACACTCAAAGCCACGTGGTGCAGCTAGATAGTAAGGAATCCGAGATGACCAATAATGACTGTGTCGAGACTGTTGATGAGAATGGTATGGAAGAATGTGGAAATAAAGTTTCAGAGAATCCTTCTAAAAGAGATGTATGTTTTTCAGGACAAGAAAATCAGAACTCTACCGGATCTTCTGGAGTGTCGGCATTGTCGGAGATGACTAATGACATGGATGAGTTCTTCAATCCCTTTATCCTTCCAGATACAGCACAGTTGGTCCATTCTACTGGGGATGATATTATGGAAAGGAAAGGGGAGGAGAGTGTTGCAGACAAAGATCTCGATGATAGTAACAGTTACTCATTACCACGCTGTTGCTCAGAATTCAGGACAGCTGACAGCGAAGGCGTCGACAGTTATTCTGTTGGTGAACTTACAGACAGAGACGATAGGATTTGCAAGTCCGAAAGCAGAAGGAAAAGAAATAGTAAAACATCAAATAAGAGCCAGGATTCTTTGGTGGGTTCTAGTCAACAAGTCGAGCTAGGGACAAAAACGTCCCCACGTCATCATAATCAATCAAAGAAGAGAAAAAATAACAGTACAAATACGAGTCCATTTGAAACATCAGAGGCAGTTGAAGAGGTCGACGACTGCACTCTCCTCGGTTTTCTGCAAAAGAGATTGAAGAGGGCAACTAGTCATGACATGAAAGACGATAGCACACCTCTAGAAATTGATAATGATCATAATGATCCCACCATTGCCTGTCTACTAAAGGATAAATCGAAGAAGAAAAGGCATCTAGGGTCGCCCAGTGGTGGAGAGCGTAAAACTAACTAG 2991 43.9 MSRRTGDDGGDDEKLSAGEEDGEDDVIDEDMEALRGACRLAGVNPEEYMNNPSSSLTAGEDSDDIDDFELVRNIRKQFSISDDEQPLCVLPTASPDEEEEDDFETLRRIQQRFGAYESDAFNKLDHSCDFNGPLEMDSNNTAIERQTSSERSSMIVFGKGSLPKAALSFIDAIKKNRSQQKFIRTKMIHLEARMEENKKLRKRFKVLKDFQGSCRRKTTCALSQMIDPRVQLLSTAKPHAKDSSKKDKRLPAMCYGPTENSHVACYRMALTKFPPSVDRKRWSNVERESLEKGIRQQFQEMVLQISVDQLSWLQGFSEDSDNLDGILASIKDFDFTPEKIREFLPKVNWEKLASMYLRGRSGAECEARWLNFEDPLINRNPWTTSDDKNLLFTIQQKGLNNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVAIFGVGDWQAVASTLEGRAGTQCSNRWKKTLDPAKSKRGHFTPDEDNRLKIAVLLFGPKNWNKKAYFLPGRNQVQCRERWSNCLDPSLRRCPWTEEEDLRLETAIQEHGYSWAKVAASVTSRTDNECRRRWKTLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTDFRPTPNTNLLCNADDPKPAAKRNVKTRRMPVSRNEESATGDAPKKRKSSNQRKQADAAAQVGIAPEEVKSTKPQRKRAYTAKTKTKGVSELPSNSERCAEQNLDTQSHVVQLDSKESEMTNNDCVETVDENGMEECGNKVSENPSKRDVCFSGQENQNSTGSSGVSALSEMTNDMDEFFNPFILPDTAQLVHSTGDDIMERKGEESVADKDLDDSNSYSLPRCCSEFRTADSEGVDSYSVGELTDRDDRICKSESRRKRNSKTSNKSQDSLVGSSQQVELGTKTSPRHHNQSKKRKNNSTNTSPFETSEAVEEVDDCTLLGFLQKRLKRATSHDMKDDSTPLEIDNDHNDPTIACLLKDKSKKKRHLGSPSGGERKTN 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31737511 31747834 - Sed0017978.1 Sed12g2104 733060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 480 531 IPR001005 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 13 28 - -
Sed12g2104 996 CDD SANT 488 529 IPR001005 -
Sed12g2104 996 Gene3D - 539 585 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 883 903 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 636 670 - -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 274 373 IPR001005 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 867 882 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 946 963 - -
Sed12g2104 996 Gene3D - 482 536 - -
Sed12g2104 996 CDD SANT 434 478 IPR001005 -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 484 578 IPR009057 -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 374 426 IPR001005 -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 355 423 IPR009057 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 532 586 IPR017930 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 946 996 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 867 930 - -
Sed12g2104 996 CDD SANT 539 582 IPR001005 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 482 IPR017930 -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 427 478 IPR001005 -
Sed12g2104 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 22 983 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
Sed12g2104 996 Gene3D - 431 481 - -
Sed12g2104 996 MobiDBLite consensus disorder prediction 610 716 - -
Sed12g2104 996 SUPERFAMILY Homeodomain-like 411 480 IPR009057 -
Sed12g2104 996 Gene3D - 376 426 - -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 485 531 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 379 424 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 432 478 IPR001005 -
Sed12g2104 996 Pfam Myb-like DNA-binding domain 537 581 IPR001005 -
Sed12g2104 996 SMART sant 484 533 IPR001005 -
Sed12g2104 996 SMART sant 278 375 IPR001005 -
Sed12g2104 996 SMART sant 378 428 IPR001005 -
Sed12g2104 996 SMART sant 536 584 IPR001005 -
Sed12g2104 996 SMART sant 431 480 IPR001005 -
Sed12g2104 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 484 531 IPR017930 -
Sed12g2104 996 ProSiteProfiles SANT domain profile. 535 586 IPR017884 -
Sed12g2104 996 MobiDBLite consensus disorder prediction 1 28 - -
Sed12g2104 996 ProSiteProfiles Myb-like domain profile. 532 582 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1258 Sed-Chr8:26123528 Sed12g2104 Sed-Chr12:31737511 7.40E-10 dispersed
Sed12g2104 Sed-Chr12:31737511 Sed14g0670 Sed-Chr14:6740812 2.30E-16 dispersed
Sed08g0391 Sed-Chr8:2356726 Sed12g2104 Sed-Chr12:31737511 2.80E-42 transposed
Sed12g2104 Sed-Chr12:31737511 Sed08g0390 Sed-Chr8:2353563 3.70E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40281 PF00249 Myb_DNA-binding 1.20E-07 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2104 K09422 - csv:101216287 1350.88