Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2108 ATGGATGGATGTGATCAAGGTCACAATCTTGGCTCTAAAGTATCTCTAGATCATGAACTTGAAAATAAATGTGGCAATGTCAATCACCAACAAAGACCTTGCTTTGATCCTAATTCTCTTGTTTCTCCCAAGGCTGTGCCGCCTATTTCCGTGGCGATGAAGAGCGATCAAGCTCTCCGTCGACCTCGGGGACGGCCGGTCGGGTCCAAGAACAAGCCAAAACCACCTATTATTATCACCCGAGATAGCGCCAATGCTCTCCGAGCTCATGCCATTGAGGTTGCCTCTGGTTCTGATGTCATTGAGAGCCTCTCCAACTTTGCTCGGAGGAAGCAGCGTGGTGTTTGCATCCTTAGTGGGAGTGGATGTGTCACTAATGTCACACTTCGCCAAGCTGCTTCATCTGGAAATATTGTTACTCTTCACGGCCGCTTTGAGATCCTTTCGTTGCTTGGATCAATCTTGCCACCACCGGCGCCGTCAGGAATCACCGGATTGACAATATACTTGTCCGGTGCACAAGGGCAGGTGGTCGGCGGGGTTGTTGTGGGAGCGCTAGTCGCCTTGGGCCCCGTCGTAGTCATGGCGGCAACATTCATGAATGCAACATTCGACCGTCTGCCGTGTGATGACGACGAGGTGGCGGCCACCATGCAGAGCCAACATTACGGCCAAAATGGGCGGAGCCACCACCACTTGGAAGTGTCGGATCTGTATGGAGTGCCACAGAACTTGATCACCAACGCCACTCTTCCGCCGGAGTTATACTCTTGGGCGGCGGCCGGCAGAACCATGTCAAAGACTTAA 807 52.42 MDGCDQGHNLGSKVSLDHELENKCGNVNHQQRPCFDPNSLVSPKAVPPISVAMKSDQALRRPRGRPVGSKNKPKPPIIITRDSANALRAHAIEVASGSDVIESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGNIVTLHGRFEILSLLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALVALGPVVVMAATFMNATFDRLPCDDDEVAATMQSQHYGQNGRSHHHLEVSDLYGVPQNLITNATLPPELYSWAAAGRTMSKT 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31776752 31778001 - Sed0012799.1 Sed12g2108 733064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2108 268 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 54 229 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g2108 268 MobiDBLite consensus disorder prediction 51 77 - -
Sed12g2108 268 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 215 - -
Sed12g2108 268 CDD DUF296 88 171 IPR005175 -
Sed12g2108 268 FunFam AT-hook motif nuclear-localized protein 87 215 - -
Sed12g2108 268 ProSiteProfiles PPC domain profile profile. 84 222 IPR005175 -
Sed12g2108 268 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 200 IPR005175 -
Sed12g2108 268 Gene3D - 87 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1013 Sed-Chr12:6513577 Sed12g2108 Sed-Chr12:31776752 2.60E-53 dispersed
Sed12g1538 Sed-Chr12:24757232 Sed12g2108 Sed-Chr12:31776752 1.20E-33 dispersed
Sed12g2108 Sed-Chr12:31776752 Sed08g0394 Sed-Chr8:2381718 5.60E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2108 - - - 0.0