Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2110 ATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGGCAGCAGATATCAGGTTCAAGAAATTATTGGTAAGGGAAGCTATGGGATTGTTGCTTCTGCCATAGATACCCATACTGATGAGAAAGTCGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTACGATTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCTCGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAACGATGATCTCACTCCTGAGCACCATCAGTTTTTCTTGTATCAGCTTCTTCGTGGTCTGAAATACATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGATTATGTTGCAACTCGGTGGTATCGTGCTCCCGAACTTTGTGGCTCTTTTTTCTCTAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTGATGACCGATGTGCTTGGCACACCTGCTGCTGAGTCCATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGCAACATGAAGAAGAAGCCGCCTGTTCTTCTCACACAAAAGTTCCCCAATGCTGATCCCTTGGCTCTCAGTTTGCTTCAACGCTTGCTTGCATTTGATCCCAAAGACCGTCCTACAGCTGAAGAGGCACTAACTGATCCTTACTTTAATGGTTTGGCCAATGTGGATCGGGAACCATCGACTCACCCGATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTGGCAAAAGATGATGTTAGAGAATTAATTTATAGAGAGATCTTGGAGTATCATCCTCAGATGCTACAAGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTCGATCGTTTCAAACGCCAGTTCGCCCATCTGGAGGAACATTATGGTAAGGGTGAAAAAAGTAGTCCACTTCAAAGACAGCATGCTTCATTGCCAAGGGAAAGGGTCTGTGCACCCAAAGATGAGGTTGCAAAGCACAATGATTCGGAAGGAATAAATGGTTCATCTGTTGCTACATCTCTTCATAGTCCCCCAAGGTCACAGGAAGAAAATGCAAACAGTATCGAACAAAATGGACTAAACAAGCCAAATTACAGCGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCCAAATGTATAGGTGTTAAACCAAAAAAGGACCTTGAGGAGGAACCGATTACGGAGACTAACGAGGAGGCAGTCGACGGGTTGTCTCATAAGGTTTCTGCCTTGCATACTTGA 1545 41.88 MDSHKKGGLETEFFTEYGEGSRYQVQEIIGKGSYGIVASAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPAAESIARIRNEKARRYLSNMKKKPPVLLTQKFPNADPLALSLLQRLLAFDPKDRPTAEEALTDPYFNGLANVDREPSTHPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKSSPLQRQHASLPRERVCAPKDEVAKHNDSEGINGSSVATSLHSPPRSQEENANSIEQNGLNKPNYSARSLLKSASISASKCIGVKPKKDLEEEPITETNEEAVDGLSHKVSALHT 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31783363 31789928 - Sed0017275.1 Sed12g2110 733066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2110 514 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2110 514 SMART serkin_6 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2110 514 MobiDBLite consensus disorder prediction 412 427 - -
Sed12g2110 514 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 20 355 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed12g2110 514 FunFam Mitogen-activated protein kinase 12 117 - -
Sed12g2110 514 FunFam Mitogen-activated protein kinase 109 337 - -
Sed12g2110 514 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524(InterPro)
Sed12g2110 514 CDD STKc_TDY_MAPK 22 359 - -
Sed12g2110 514 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Sed12g2110 514 FunFam Mitogen-activated protein kinase 338 360 - -
Sed12g2110 514 MobiDBLite consensus disorder prediction 394 460 - -
Sed12g2110 514 MobiDBLite consensus disorder prediction 481 514 - -
Sed12g2110 514 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2110 514 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2110 514 Gene3D Phosphorylase Kinase; domain 1 39 360 - -
Sed12g2110 514 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Sed12g2110 514 MobiDBLite consensus disorder prediction 428 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0205 Sed-Chr6:1538295 Sed12g2110 Sed-Chr12:31783363 8.80E-200 dispersed
Sed06g0206 Sed-Chr6:1539806 Sed12g2110 Sed-Chr12:31783363 5.30E-139 dispersed
Sed08g0398 Sed-Chr8:2389941 Sed12g2110 Sed-Chr12:31783363 1.90E-241 dispersed
Sed12g2110 Sed-Chr12:31783363 Sed13g0648 Sed-Chr13:4381399 2.10E-178 dispersed
Sed01g1760 Sed-Chr1:12815884 Sed12g2110 Sed-Chr12:31783363 3.70E-196 wgd
Sed12g2110 Sed-Chr12:31783363 Sed08g0397 Sed-Chr8:2389941 1.40E-275 wgd
Sed12g2110 Sed-Chr12:31783363 Sed08g2751 Sed-Chr8:39187253 5.50E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80029 PF00069 Pkinase 1.10E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2110 - - - 0.0