Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2110 | ATGGACTCCCACAAGAAGGGTGGGTTGGAAACAGAATTTTTCACAGAGTATGGAGAGGGCAGCAGATATCAGGTTCAAGAAATTATTGGTAAGGGAAGCTATGGGATTGTTGCTTCTGCCATAGATACCCATACTGATGAGAAAGTCGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTTTCTGATGCCACAAGAATTTTAAGAGAAATTAAACTCCTACGATTGCTCCGTCATCCGGATATAGTAGAAATAAAGCACATTATGCTTCCTCCTTCTCGGAGAGAATTCAGAGATATTTATGTTGTTTTTGAATTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAACGATGATCTCACTCCTGAGCACCATCAGTTTTTCTTGTATCAGCTTCTTCGTGGTCTGAAATACATACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCCGACTGCAAACTGAAAATATGTGATTTTGGACTTGCTCGTGTATCATTTAATGATGCTCCATCTGCTATTTTCTGGACTGATTATGTTGCAACTCGGTGGTATCGTGCTCCCGAACTTTGTGGCTCTTTTTTCTCTAAATACACTCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCGGAAATGCTCACTGGAAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTGATGACCGATGTGCTTGGCACACCTGCTGCTGAGTCCATTGCTAGGATTCGAAATGAAAAGGCAAGAAGATACCTTAGCAACATGAAGAAGAAGCCGCCTGTTCTTCTCACACAAAAGTTCCCCAATGCTGATCCCTTGGCTCTCAGTTTGCTTCAACGCTTGCTTGCATTTGATCCCAAAGACCGTCCTACAGCTGAAGAGGCACTAACTGATCCTTACTTTAATGGTTTGGCCAATGTGGATCGGGAACCATCGACTCACCCGATTTCAAAACTTGAGTTTGAATTTGAGAGAAGAAAGTTGGCAAAAGATGATGTTAGAGAATTAATTTATAGAGAGATCTTGGAGTATCATCCTCAGATGCTACAAGAATATCTCCGCAGTGGAGAACAAACTAGTTTCATGTACCCAAGTGGTGTCGATCGTTTCAAACGCCAGTTCGCCCATCTGGAGGAACATTATGGTAAGGGTGAAAAAAGTAGTCCACTTCAAAGACAGCATGCTTCATTGCCAAGGGAAAGGGTCTGTGCACCCAAAGATGAGGTTGCAAAGCACAATGATTCGGAAGGAATAAATGGTTCATCTGTTGCTACATCTCTTCATAGTCCCCCAAGGTCACAGGAAGAAAATGCAAACAGTATCGAACAAAATGGACTAAACAAGCCAAATTACAGCGCTCGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCCTCCAAATGTATAGGTGTTAAACCAAAAAAGGACCTTGAGGAGGAACCGATTACGGAGACTAACGAGGAGGCAGTCGACGGGTTGTCTCATAAGGTTTCTGCCTTGCATACTTGA | 1545 | 41.88 | MDSHKKGGLETEFFTEYGEGSRYQVQEIIGKGSYGIVASAIDTHTDEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPAAESIARIRNEKARRYLSNMKKKPPVLLTQKFPNADPLALSLLQRLLAFDPKDRPTAEEALTDPYFNGLANVDREPSTHPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEEHYGKGEKSSPLQRQHASLPRERVCAPKDEVAKHNDSEGINGSSVATSLHSPPRSQEENANSIEQNGLNKPNYSARSLLKSASISASKCIGVKPKKDLEEEPITETNEEAVDGLSHKVSALHT | 514 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 31783363 | 31789928 | - | Sed0017275.1 | Sed12g2110 | 733066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2110 | 514 | ProSiteProfiles | Protein kinase domain profile. | 23 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2110 | 514 | SMART | serkin_6 | 23 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2110 | 514 | MobiDBLite | consensus disorder prediction | 412 | 427 | - | - | |
Sed12g2110 | 514 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 20 | 355 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed12g2110 | 514 | FunFam | Mitogen-activated protein kinase | 12 | 117 | - | - | |
Sed12g2110 | 514 | FunFam | Mitogen-activated protein kinase | 109 | 337 | - | - | |
Sed12g2110 | 514 | ProSitePatterns | Protein kinases ATP-binding region signature. | 29 | 53 | IPR017441 | GO:0005524(InterPro) | |
Sed12g2110 | 514 | CDD | STKc_TDY_MAPK | 22 | 359 | - | - | |
Sed12g2110 | 514 | SUPERFAMILY | Protein kinase-like (PK-like) | 20 | 319 | IPR011009 | - | |
Sed12g2110 | 514 | FunFam | Mitogen-activated protein kinase | 338 | 360 | - | - | |
Sed12g2110 | 514 | MobiDBLite | consensus disorder prediction | 394 | 460 | - | - | |
Sed12g2110 | 514 | MobiDBLite | consensus disorder prediction | 481 | 514 | - | - | |
Sed12g2110 | 514 | ProSitePatterns | MAP kinase signature. | 58 | 161 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2110 | 514 | Pfam | Protein kinase domain | 23 | 314 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2110 | 514 | Gene3D | Phosphorylase Kinase; domain 1 | 39 | 360 | - | - | |
Sed12g2110 | 514 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 337 | - | - | |
Sed12g2110 | 514 | MobiDBLite | consensus disorder prediction | 428 | 460 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0205 | Sed-Chr6:1538295 | Sed12g2110 | Sed-Chr12:31783363 | 8.80E-200 | dispersed | |
Sed06g0206 | Sed-Chr6:1539806 | Sed12g2110 | Sed-Chr12:31783363 | 5.30E-139 | dispersed | |
Sed08g0398 | Sed-Chr8:2389941 | Sed12g2110 | Sed-Chr12:31783363 | 1.90E-241 | dispersed | |
Sed12g2110 | Sed-Chr12:31783363 | Sed13g0648 | Sed-Chr13:4381399 | 2.10E-178 | dispersed | |
Sed01g1760 | Sed-Chr1:12815884 | Sed12g2110 | Sed-Chr12:31783363 | 3.70E-196 | wgd | |
Sed12g2110 | Sed-Chr12:31783363 | Sed08g0397 | Sed-Chr8:2389941 | 1.40E-275 | wgd | |
Sed12g2110 | Sed-Chr12:31783363 | Sed08g2751 | Sed-Chr8:39187253 | 5.50E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80029 | PF00069 | Pkinase | 1.10E-68 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2110 | - | - | - | 0.0 |