Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2119 ATGGCGGTTGCGCTAATGGAGAATCTGCTCGGACTTCTCCGTATTCGAATCATTCGCGGCGTCAATCTTGCTGTTCGCGATGTTCGTAGCAGCGATCCTTATGTGATCGTCAAGATGGGAAAACAAAAATTGAAGACACGGGTGATAAAGAAGGATGTCAACCCTGTATGGAATGAAGATCTAACTCTTTCTGTCAGTGATCCTAATCTCCCCATTAAGCTGACTGTTTACGATCACGACACGTTTACCAAGGATGATAAAATGGGACAAGCTGAGTTTGATATCAGATCATTTGTGGACGCTTTGAAGATGAACTTACAAAATCTTCCCAGTGGAACGCCAATCTCCCGAATGCTACCGAGCAGGCAAAACTGTCTCGCTGAAGAGAGCTGCGTCGTCTGGAAAGACGGTAAAGTTATCCAAGATATCTACCTTAGATTGAGAAACGTCGAATGCGGTGAAGTCGAAATTCAGTTGCAGTGGATTAATATTCCACACCCCAAAGGCTAA 510 44.51 MAVALMENLLGLLRIRIIRGVNLAVRDVRSSDPYVIVKMGKQKLKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFTKDDKMGQAEFDIRSFVDALKMNLQNLPSGTPISRMLPSRQNCLAEESCVVWKDGKVIQDIYLRLRNVECGEVEIQLQWINIPHPKG 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31868325 31872974 - Sed0016291.1 Sed12g2119 733075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2119 169 Pfam C2 domain 11 99 IPR000008 -
Sed12g2119 169 SMART C2_3c 12 107 IPR000008 -
Sed12g2119 169 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 6 167 IPR044562 -
Sed12g2119 169 CDD C2_ArfGAP 10 153 - -
Sed12g2119 169 Gene3D C2 domain 7 168 IPR035892 -
Sed12g2119 169 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 156 IPR035892 -
Sed12g2119 169 ProSiteProfiles C2 domain profile. 1 119 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2703 Sed-Chr5:38465378 Sed12g2119 Sed-Chr12:31868325 9.40E-64 dispersed
Sed06g1373 Sed-Chr6:38077225 Sed12g2119 Sed-Chr12:31868325 8.40E-65 dispersed
Sed10g0063 Sed-Chr10:385591 Sed12g2119 Sed-Chr12:31868325 1.20E-33 dispersed
Sed11g1098 Sed-Chr11:26685623 Sed12g2119 Sed-Chr12:31868325 2.50E-09 dispersed
Sed11g1174 Sed-Chr11:27645625 Sed12g2119 Sed-Chr12:31868325 3.60E-12 dispersed
Sed11g1175 Sed-Chr11:27645625 Sed12g2119 Sed-Chr12:31868325 2.80E-12 dispersed
Sed11g1444 Sed-Chr11:30266181 Sed12g2119 Sed-Chr12:31868325 1.00E-39 dispersed
Sed11g1445 Sed-Chr11:30266181 Sed12g2119 Sed-Chr12:31868325 1.70E-52 dispersed
Sed12g2119 Sed-Chr12:31868325 Sed14g1619 Sed-Chr14:24380671 1.20E-34 dispersed
Sed01g1771 Sed-Chr1:12954990 Sed12g2119 Sed-Chr12:31868325 2.10E-67 wgd
Sed12g2119 Sed-Chr12:31868325 Sed08g0403 Sed-Chr8:2449594 1.20E-79 wgd
Sed12g2119 Sed-Chr12:31868325 Sed08g2759 Sed-Chr8:39246157 5.70E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2119 - - - 0.0