Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2137 ATGGCACGCCTATCTCAACCGGCCGCCGCTGCCACCACCACCACCATTCTCATATTGATTTCCATGGAGGTCATTGTCTCATGGGGTGCTTCCACAGATGCAGAATCACTCCTCAGATTCAAAAAATCTCTCGAAATCGGCAACAATGACGCGCTGGCCAATTGGGCTGCCGGGTCCTCCCCGTGCTCCGGCGACAAGGCGAACTGGGTCGGGATTGTTTGCGATAACGGAAGCGTTTTGGGATTGACACTTGAGAACATGGGGCTCAAGGGAAAGATTGACATGGAGTCTCTAGAAGGGGTGCCCCAATTAAGGACACTCAGCCTTAAGAACAATGAATTTGAGGGCAGTTTTCCAGATATAAAGAGACTTGGGGCATTGAAAGCTCTGTATTTGACAGGGAACCATTTCTCAGGGATTATTCCTGGGGATGTATTTTCAAGAATGTCTTCTTTGAAGAAATTGTGTTTGGGTAATAACCAATTTGAAGGGCAGATTCCATGGTCATTGGTTGACGTTACAAAGTTGTTGGTATTGAGGCTTGAAGGGAACAAGTTTTCTGGCCTTATTCCTAATTTCCAGCAGAGCACATTGAAGAGCTTCAATGTCTCCAACAATCATAAACTTCATGGTCCAATCCCAAAGGCCTTCAGCCACCTCAATCCATCCTCCTTTTCAGGCATTGAAGGTTTATGTGGAGCACCACTTGATAAACCATGCAACAGTACAAAAAAGTCGTCGGTTGCGAGCGTCATAATGGTTTCAATAGCTGTGACAGCAGCTCTACTTGCCATCGGTGCCGGAGTGATCGTCCTCTGCCGTCGAAAACAGTCATCTTCTTCTGAAGAGGAACCAGCCTCTCAATGTGCTAGTGAGTTAAATCCAGCACCCGGTTCGAGGTCACCGAACCGTGGCTCCAGCCATGGAGGGTCTGCTAGACGAGCAGTCGAGAGTGCTAAGTTGTCATTCGTAAGAGAGGATTCAGAGAAGTTTGAATTATCAGACTTGCTAAGAGCCTCTGCAGAAATCCTAGGAAGTGGGTGCTTTGGTTCTTCTTACAAAGCAGCCTTGAGCAATGGACCTGTGATGGTTGTGAAGAGATTCAAGCAAATGAACAATGTGGACAAAGAGGAATTCCAAGAACACATGAGGAGAATTGGAAGGTTGAAGCATCGAAACTTGCTTTCTCTTGTGGCATACTACTACAAAAAGGACGAGAAGCTTCTCATTACCGACTATGTCGAGAAGGGTAGCTTGGCAGTTCTACTTCACGGGCGCAAAGCTGGGGGTCAACCAGCCCTCGATTGGCCTGCAAGATTGAAGATCATCAAGGGCATTGCAAAGGGTCTTTGTTATCTCTACGCCGAGCTTCCAAGTCTCGTAACCCCACACGGTCATCTCAAGTCTTCAAATGTCCTTATCAAGGCCAACAATGAGCCCCTTCTTTCGGACTATGGCTTAATCCCGGTTGTGAACCAAGAACACGCCCAAGAGCAAATGGTCGCCTACAAATCCCCCGAGTACTCCCAACATGGCCGTATCACAAAGAAGACAGACGTGTGGAGCTTTGGGCTGTTGATGTTAGAGATTCTAACTGGGAAATTCCCAGCCAACTTTCTGCATCAGAACAAGGATGGGGAAGAGGAAGATTTGGCGAGTTGGGTCAGATCTATTCCCGAAAAAGAATGGAACAGCCAAGTGTTCGATAAGGACATGGGGACAATCAAGGGAGGCGATGGCGAGATTATGAAGCTACTGAGGATTGCACTAGCATGTTGTGAGAGCGACTTCGAGAATAGGTTGGAATTGCGAGAGGTTGCGGAAAAGATTGAGGAGTTGAAAGAAAAGGAAGTGGATGACGATTACTATTCTTCATACGCCAGTGAAGCTGACATTAGATCTTCGAGAGGAGGGTTATCTGATGACCTCAATTTCAACATATGA 1944 47.07 MARLSQPAAAATTTTILILISMEVIVSWGASTDAESLLRFKKSLEIGNNDALANWAAGSSPCSGDKANWVGIVCDNGSVLGLTLENMGLKGKIDMESLEGVPQLRTLSLKNNEFEGSFPDIKRLGALKALYLTGNHFSGIIPGDVFSRMSSLKKLCLGNNQFEGQIPWSLVDVTKLLVLRLEGNKFSGLIPNFQQSTLKSFNVSNNHKLHGPIPKAFSHLNPSSFSGIEGLCGAPLDKPCNSTKKSSVASVIMVSIAVTAALLAIGAGVIVLCRRKQSSSSEEEPASQCASELNPAPGSRSPNRGSSHGGSARRAVESAKLSFVREDSEKFELSDLLRASAEILGSGCFGSSYKAALSNGPVMVVKRFKQMNNVDKEEFQEHMRRIGRLKHRNLLSLVAYYYKKDEKLLITDYVEKGSLAVLLHGRKAGGQPALDWPARLKIIKGIAKGLCYLYAELPSLVTPHGHLKSSNVLIKANNEPLLSDYGLIPVVNQEHAQEQMVAYKSPEYSQHGRITKKTDVWSFGLLMLEILTGKFPANFLHQNKDGEEEDLASWVRSIPEKEWNSQVFDKDMGTIKGGDGEIMKLLRIALACCESDFENRLELREVAEKIEELKEKEVDDDYYSSYASEADIRSSRGGLSDDLNFNI 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31974919 31977973 - Sed0001133.1 Sed12g2137 733093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2137 647 Gene3D Ribonuclease Inhibitor 147 241 IPR032675 -
Sed12g2137 647 FunFam Nuclear pore complex protein NUP107 30 192 - -
Sed12g2137 647 Pfam Leucine Rich Repeat 151 170 IPR001611 GO:0005515(InterPro)
Sed12g2137 647 MobiDBLite consensus disorder prediction 282 312 - -
Sed12g2137 647 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2137 647 Pfam Leucine rich repeat N-terminal domain 31 75 IPR013210 -
Sed12g2137 647 FunFam pollen receptor-like kinase 1 307 413 - -
Sed12g2137 647 SUPERFAMILY L domain-like 33 221 - -
Sed12g2137 647 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 32 615 IPR046959 -
Sed12g2137 647 Gene3D Transferase(Phosphotransferase) domain 1 414 632 - -
Sed12g2137 647 Gene3D Ribonuclease Inhibitor 32 146 IPR032675 -
Sed12g2137 647 FunFam Pollen receptor-like kinase 1 414 624 - -
Sed12g2137 647 Gene3D Phosphorylase Kinase; domain 1 305 413 - -
Sed12g2137 647 MobiDBLite consensus disorder prediction 282 308 - -
Sed12g2137 647 SUPERFAMILY Protein kinase-like (PK-like) 342 613 IPR011009 -
Sed12g2137 647 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1520 Sed-Chr3:9697348 Sed12g2137 Sed-Chr12:31974919 1.70E-138 dispersed
Sed06g0004 Sed-Chr6:58549 Sed12g2137 Sed-Chr12:31974919 4.10E-120 dispersed
Sed07g1202 Sed-Chr7:8994736 Sed12g2137 Sed-Chr12:31974919 2.10E-76 dispersed
Sed12g2137 Sed-Chr12:31974919 Sed12g2419 Sed-Chr12:33925304 8.90E-70 dispersed
Sed03g1840 Sed-Chr3:12190994 Sed12g2137 Sed-Chr12:31974919 5.80E-98 transposed
Sed13g2109 Sed-Chr13:25795179 Sed12g2137 Sed-Chr12:31974919 1.80E-117 transposed
Sed01g1779 Sed-Chr1:13018392 Sed12g2137 Sed-Chr12:31974919 5.10E-65 wgd
Sed12g2137 Sed-Chr12:31974919 Sed08g0426 Sed-Chr8:2616673 7.40E-250 wgd
Sed12g2137 Sed-Chr12:31974919 Sed08g2770 Sed-Chr8:39295344 9.50E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80034 PF07714 PK_Tyr_Ser-Thr 1.20E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2137 K28077 - csv:101213261 957.592