Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2148 ATGAAGAACTTACCTCTCTATTTTCTCCGATCGCGGCCGTCTCTCCACTTTCGGTCGTCGACCGCCACCCCGTTCTTATCTCACCTCTCCCATTTCATAACACTCTCCCTCTTAGGCTTTGGAGCCCTAAAGCTCACCACAACAAGAACCCCCTCCCCCAATGACCTCAACATCTTCTTCACCTCCGTCTCCGCCGCCACCGTTTCGAGCATGTCCGTCGTCGAAATGGAAGTCTTTTCCAACACCCAACTCGTCATCATCGCCATCCTCATGTTCCTCGGCGGCGAAGTCTTTGTCTCCGCCGTCGAGTTCCAACTCTCCCATTGGTTCAAAACCCCCCATGTCGACTCGATCACTCACAACCTCAAGTTGGAAAGTGGGTCGACAAGGACGACCACGATCGATGAGACAAGTGTCTCAAAATCATCGTTGAAACTTTTGGGTCGAGTGGTGATTGGGTATCTTTTCGGGGTTAATTTTGTTGGTTCTTGTTTGATATTCTTATACATGGTAATGGTGCCTCAAGCAAAGCAAGTGCTTGAAAGTAAAGGCATAAATTTGGTTACTTTTTCAATTTTTAGTTCGCTTTCTACTTTTTCCAATTGTGGATTTATTCCCACTAATGAAAATATGATCATCTTCAAGAACAATTCCAGTCTTTTGCTCATTCTCATCTCCCAGGTGCTTCTGGGCGGGTGTTTGTATCCGGTAGGTCTCCGGTTACTAATAACGGCAGCGGCGGCGGCGACGGCGAAAAAAGAGTTCAGATACATATTGAAGAACTACTCGGAGATGGGCTATAATTCCCATCTCTTTTCGGGGCTCCGGTGCGGGTTTCTGGCGGCCACGGCGGCGGGATTGATAGTTTTACAGTTGATGCTATTTTGCTCGTCGGAGTGGAAAAACTCCGGCGGGATTTGGGATGGCATGAATCCGTACCAGAAATTTGTGGGCTGCGTTTTTCAGGTGGTGAATTCAAGACACGCCGGAGAATCGGTGGTGGACATTTCCGGCGTCTCGCCGGCGATCTTGGTCGTGTTTATTGTCATGATGTATCTTCCACCATACACAACTTTTTTACCAACAAGGAATAAAGAGATAGATTCAATGGAATATGGGAAGAGCAAAAGACAAAACTTGGTGGAATTCTTGACATTTTCACAGCTCTCTTATTTGGCAATTTTTATTATTCTAATATGCATTACAGAGAGAGATAAGCTTAGAGATGATCCTCTCAACTTTACTGTGCTCAACATCACCATTGAAGTCATCAGTGCATATGGAAATGTTGGCTTCTCAACTGGGTATAGCTGCAAAAGACAACTGAAACCTGAAAGCACTTGCAAAAATGCATGGTTTGGATTTAGTGGAAGATGGAGTGGAAAGGGAAAATTCATTCTAATTTTGGTTATGATCTTTGGAAGATTGAAAAGTTTTACTATGCATGGTGGTACAGCATGGAAATTATCATAA 1473 44.81 MKNLPLYFLRSRPSLHFRSSTATPFLSHLSHFITLSLLGFGALKLTTTRTPSPNDLNIFFTSVSAATVSSMSVVEMEVFSNTQLVIIAILMFLGGEVFVSAVEFQLSHWFKTPHVDSITHNLKLESGSTRTTTIDETSVSKSSLKLLGRVVIGYLFGVNFVGSCLIFLYMVMVPQAKQVLESKGINLVTFSIFSSLSTFSNCGFIPTNENMIIFKNNSSLLLILISQVLLGGCLYPVGLRLLITAAAAATAKKEFRYILKNYSEMGYNSHLFSGLRCGFLAATAAGLIVLQLMLFCSSEWKNSGGIWDGMNPYQKFVGCVFQVVNSRHAGESVVDISGVSPAILVVFIVMMYLPPYTTFLPTRNKEIDSMEYGKSKRQNLVEFLTFSQLSYLAIFIILICITERDKLRDDPLNFTVLNITIEVISAYGNVGFSTGYSCKRQLKPESTCKNAWFGFSGRWSGKGKFILILVMIFGRLKSFTMHGGTAWKLS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32080542 32086585 - Sed0004186.1 Sed12g2148 733104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2148 490 Pfam Cation transport protein 41 353 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
Sed12g2148 490 Pfam Cation transport protein 388 479 IPR003445 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0055085(InterPro)
Sed12g2148 490 PANTHER POTASSIUM TRANSPORT PROTEIN DDB_G0292412-RELATED 15 121 IPR051143 GO:0005886(PANTHER)|GO:0008324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2148 Sed-Chr12:32080542 Sed08g0436 Sed-Chr8:2687469 4.40E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2148 K24976 - csv:101206239 651.744