Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2152 ATGGGCTCCCTTCCCAATTCTTTCCCCCTCTTCTCTCTCATGCTCCTCTCCGCCGTCGTCTCTCCGGCCGTCACCGCCGCCGCAACCTCCGCCGACAAACCGCTAAACCTCCCCCTTCCCCACCCATTACAGAAAAATCGTTTTATCGCTTCTCCATCTCCGCCGCCGCAGCACGCCGCCCCTCCACCGGAGGAGAAACCCATCTACTCTCCATTCCGGCCAAGCATGGCGGTGGTGGTCGGAGTTCTAACCACCACTTTCTCCATCACATTCCTCCTCCTCCTCTACGCCAAACACTGCAAGCGCGCAAATGCGGCGCTGGTCGGATACTCGAGAAACCCCAATTCCACGATCGGAGCTCCGACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGCTGCCGATTTTCCGATTTGGGTCTTTGTCCGGCCAGAAAGATGGCCTGGAATGCGCCGTTTGTTTGAACAAATTCGAGCCGCCGGAGATTCTCAGACTCTTGCCCAAATGTAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACGTGCCCTCTCTGCCGATACAGAGTCCACCCAGAAGACGTTTTGTTTCAAGACGTCAACATATTCCTCCACCCCCATCCGCCGCCACCGCCGCCGCCGCCGGTGGCGGCAGATCTAGCATTGAACGCAGAACAGGGGAAAAAAAGCGCCAAAGCTCGAATCGCCGGCAGAGTCTCCGGAAGACACTCGTCGGTGGGTGAAAATCGAACCGGCGAGTCCAGTCACCGGAACCCGGCGATGTGGAGACGGTCACTCGACAGTAAAAGAACCGAACCGGTCGCCGTCGGGTGTTTTGATCGGCACCGGAAAGATGGGTTGCTGTTGCCTGAAGAAAAATCGAATCAGAATCTGAACCGGGGCAGATTGGATCACCGGATTATAGTGTCACCGGCGGCGCCGGTGACGATGCAGAGATGGAGCGATGTAGAGCCGTCGGATCTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGTCGCAGGTATTCGGCAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGAAGCTGGCCGGGAAAGGGACCGGGCTGATGATGATGGCAGATGTGTAA 1152 56.86 MGSLPNSFPLFSLMLLSAVVSPAVTAAATSADKPLNLPLPHPLQKNRFIASPSPPPQHAAPPPEEKPIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRANAALVGYSRNPNSTIGAPTTRKNSGIDQAVIESLPIFRFGSLSGQKDGLECAVCLNKFEPPEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVHPEDVLFQDVNIFLHPHPPPPPPPPVAADLALNAEQGKKSAKARIAGRVSGRHSSVGENRTGESSHRNPAMWRRSLDSKRTEPVAVGCFDRHRKDGLLLPEEKSNQNLNRGRLDHRIIVSPAAPVTMQRWSDVEPSDLLYLRSEMIISDSRRYSAASLPPELKRQRRMGKLAGKGTGLMMMADV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32105109 32107035 + Sed0002465.1 Sed12g2152 733108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2152 383 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Sed12g2152 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 54 353 - -
Sed12g2152 383 CDD RING-H2_EL5-like 153 196 - -
Sed12g2152 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Sed12g2152 383 Pfam Ring finger domain 153 196 IPR001841 -
Sed12g2152 383 SMART ring_2 154 195 IPR001841 -
Sed12g2152 383 MobiDBLite consensus disorder prediction 240 268 - -
Sed12g2152 383 FunFam RING-H2 finger protein ATL43 129 203 - -
Sed12g2152 383 MobiDBLite consensus disorder prediction 46 66 - -
Sed12g2152 383 MobiDBLite consensus disorder prediction 253 267 - -
Sed12g2152 383 SUPERFAMILY RING/U-box 134 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0651 Sed-Chr5:4771702 Sed12g2152 Sed-Chr12:32105109 1.20E-08 dispersed
Sed08g0797 Sed-Chr8:6192142 Sed12g2152 Sed-Chr12:32105109 9.20E-40 dispersed
Sed12g1836 Sed-Chr12:29634101 Sed12g2152 Sed-Chr12:32105109 1.40E-37 dispersed
Sed12g2152 Sed-Chr12:32105109 Sed12g2239 Sed-Chr12:32820733 1.30E-23 dispersed
Sed12g2152 Sed-Chr12:32105109 Sed08g0438 Sed-Chr8:2704948 1.40E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2152 K19041 - csv:101203916 515.383