Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2152 | ATGGGCTCCCTTCCCAATTCTTTCCCCCTCTTCTCTCTCATGCTCCTCTCCGCCGTCGTCTCTCCGGCCGTCACCGCCGCCGCAACCTCCGCCGACAAACCGCTAAACCTCCCCCTTCCCCACCCATTACAGAAAAATCGTTTTATCGCTTCTCCATCTCCGCCGCCGCAGCACGCCGCCCCTCCACCGGAGGAGAAACCCATCTACTCTCCATTCCGGCCAAGCATGGCGGTGGTGGTCGGAGTTCTAACCACCACTTTCTCCATCACATTCCTCCTCCTCCTCTACGCCAAACACTGCAAGCGCGCAAATGCGGCGCTGGTCGGATACTCGAGAAACCCCAATTCCACGATCGGAGCTCCGACGACGAGGAAGAACTCCGGCATCGACCAGGCGGTGATCGAATCGCTGCCGATTTTCCGATTTGGGTCTTTGTCCGGCCAGAAAGATGGCCTGGAATGCGCCGTTTGTTTGAACAAATTCGAGCCGCCGGAGATTCTCAGACTCTTGCCCAAATGTAAACACGCCTTCCATGTCGAATGCGTCGATACTTGGCTCGACGCTCACTCCACGTGCCCTCTCTGCCGATACAGAGTCCACCCAGAAGACGTTTTGTTTCAAGACGTCAACATATTCCTCCACCCCCATCCGCCGCCACCGCCGCCGCCGCCGGTGGCGGCAGATCTAGCATTGAACGCAGAACAGGGGAAAAAAAGCGCCAAAGCTCGAATCGCCGGCAGAGTCTCCGGAAGACACTCGTCGGTGGGTGAAAATCGAACCGGCGAGTCCAGTCACCGGAACCCGGCGATGTGGAGACGGTCACTCGACAGTAAAAGAACCGAACCGGTCGCCGTCGGGTGTTTTGATCGGCACCGGAAAGATGGGTTGCTGTTGCCTGAAGAAAAATCGAATCAGAATCTGAACCGGGGCAGATTGGATCACCGGATTATAGTGTCACCGGCGGCGCCGGTGACGATGCAGAGATGGAGCGATGTAGAGCCGTCGGATCTGCTGTATCTACGGTCAGAAATGATAATATCTGACAGTCGCAGGTATTCGGCAGCTTCATTACCACCGGAATTAAAGAGACAGCGACGGATGGGGAAGCTGGCCGGGAAAGGGACCGGGCTGATGATGATGGCAGATGTGTAA | 1152 | 56.86 | MGSLPNSFPLFSLMLLSAVVSPAVTAAATSADKPLNLPLPHPLQKNRFIASPSPPPQHAAPPPEEKPIYSPFRPSMAVVVGVLTTTFSITFLLLLYAKHCKRANAALVGYSRNPNSTIGAPTTRKNSGIDQAVIESLPIFRFGSLSGQKDGLECAVCLNKFEPPEILRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVHPEDVLFQDVNIFLHPHPPPPPPPPVAADLALNAEQGKKSAKARIAGRVSGRHSSVGENRTGESSHRNPAMWRRSLDSKRTEPVAVGCFDRHRKDGLLLPEEKSNQNLNRGRLDHRIIVSPAAPVTMQRWSDVEPSDLLYLRSEMIISDSRRYSAASLPPELKRQRRMGKLAGKGTGLMMMADV | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 32105109 | 32107035 | + | Sed0002465.1 | Sed12g2152 | 733108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2152 | 383 | ProSiteProfiles | Zinc finger RING-type profile. | 154 | 196 | IPR001841 | - | |
Sed12g2152 | 383 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 54 | 353 | - | - | |
Sed12g2152 | 383 | CDD | RING-H2_EL5-like | 153 | 196 | - | - | |
Sed12g2152 | 383 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 204 | IPR013083 | - | |
Sed12g2152 | 383 | Pfam | Ring finger domain | 153 | 196 | IPR001841 | - | |
Sed12g2152 | 383 | SMART | ring_2 | 154 | 195 | IPR001841 | - | |
Sed12g2152 | 383 | MobiDBLite | consensus disorder prediction | 240 | 268 | - | - | |
Sed12g2152 | 383 | FunFam | RING-H2 finger protein ATL43 | 129 | 203 | - | - | |
Sed12g2152 | 383 | MobiDBLite | consensus disorder prediction | 46 | 66 | - | - | |
Sed12g2152 | 383 | MobiDBLite | consensus disorder prediction | 253 | 267 | - | - | |
Sed12g2152 | 383 | SUPERFAMILY | RING/U-box | 134 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0651 | Sed-Chr5:4771702 | Sed12g2152 | Sed-Chr12:32105109 | 1.20E-08 | dispersed | |
Sed08g0797 | Sed-Chr8:6192142 | Sed12g2152 | Sed-Chr12:32105109 | 9.20E-40 | dispersed | |
Sed12g1836 | Sed-Chr12:29634101 | Sed12g2152 | Sed-Chr12:32105109 | 1.40E-37 | dispersed | |
Sed12g2152 | Sed-Chr12:32105109 | Sed12g2239 | Sed-Chr12:32820733 | 1.30E-23 | dispersed | |
Sed12g2152 | Sed-Chr12:32105109 | Sed08g0438 | Sed-Chr8:2704948 | 1.40E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2152 | K19041 | - | csv:101203916 | 515.383 |