Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2155 ATGGGAGACCACAACGAGCTCTGCAACATCAAGCTTGGGCTTAGCCTTGGGTTGGGATTTGGCGATGAAATATTTGCCCCAAAAAAGATGCAAAAAATCAGCAATATTATTTCCAGCCCCAAATTCTCCATTCCAAAGGAAGAATTATTGGCTCTTCACAATAATGAAACCTCTCAAGATTCTTCCTTTCACAACAATTTTGGATCAGAAACTGAGAATATCAGAAAAAAGCTTAGGCTTTCCAAAGAACAGTCCTCTTTGCTTGAGAAAAGCTTCAAACTTCACACCACTTTGAATCAGTCTCAAAAGCAAGCACTTGCCCAACAATTAAACCTCAAAACCAGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAGTTGAAACAAACCGAGGTAGATTGCGAGTTTTTGAAGAAGTGTTGCGAAAAGCTTAACGAAGAGAATCGAAGGTTGAAGAAAGAGTTACATGAACTAAGATCCATAAAACTTGGAGCTTCACAATTATATATTCAGCTGCCAAAGGCGGCGTCGCTCACAATTTGTCCCTCATGCGACAAAATTACTAGGACGGCCGCCGTCAGCGCCGCGGTGGAGCCAAATTCTCCGGCCCACACAATAATTTAG 633 42.02 MGDHNELCNIKLGLSLGLGFGDEIFAPKKMQKISNIISSPKFSIPKEELLALHNNETSQDSSFHNNFGSETENIRKKLRLSKEQSSLLEKSFKLHTTLNQSQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLNEENRRLKKELHELRSIKLGASQLYIQLPKAASLTICPSCDKITRTAAVSAAVEPNSPAHTII 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32126683 32128420 - Sed0010963.1 Sed12g2155 733111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2155 210 CDD homeodomain 75 132 IPR001356 GO:0003677(InterPro)
Sed12g2155 210 SMART HOX_1 73 135 IPR001356 GO:0003677(InterPro)
Sed12g2155 210 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed12g2155 210 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677(InterPro)
Sed12g2155 210 Pfam Homeodomain 75 129 IPR001356 GO:0003677(InterPro)
Sed12g2155 210 SUPERFAMILY Homeodomain-like 59 132 IPR009057 -
Sed12g2155 210 Gene3D - 68 136 - -
Sed12g2155 210 Coils Coil 130 164 - -
Sed12g2155 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 196 IPR050762 -
Sed12g2155 210 SMART halz 131 174 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g2155 210 Pfam Homeobox associated leucine zipper 131 163 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2155 Sed-Chr12:32126683 Sed14g0964 Sed-Chr14:18805674 4.50E-39 dispersed
Sed12g2155 Sed-Chr12:32126683 Sed08g0440 Sed-Chr8:2723647 7.40E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40283 PF00046 Homeodomain 9.40E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2155 K09338 - csv:101203427 233.032