Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2173 ATGGACAATATCGGAGACGCGTACATGAATTACTTGCAGAATTCCATGCTTTCCGCCGATGAGTTCGACAGTTGGGCGTTCGACGATCGCGTGTCCGGCTACGACGATTCGAGTTCGTCGGAGGGAGTCCGGTCGCCGTCGACGGCGTCGAAGAACATTGTGTTGGAGAGGGATAGGAGGAGGAAGCTCAACGAGAGGCTTTTCGCTCTTCGATCGGTCGTTCCTAATATTTCCAAGATGGACAAGGCTTCCATTATAAAAGATGCAATTGATTACATCCAAAATTTGCACGAACAAGAAAGAAGGGTTAAAACAGAGCTTTATGAGCTCGAATCAGGACAATTCAAGAAGTTTACAGGGTATGATCAGTTCGACCCGGAGGTGCCATTGATGCAAAGATCAAAGAGGATCAAAACAGACCGCTTCAGATGTGAATCTTTTCCTTCAAGAACTTTCCCCATTGAAGTCATGGATCTGAGTGTATCATATATGGGGGAAAGAATGGTGGTGGTGAGCTTGACTTGTTGTAAAAGACCAGATTCAATGGTTAGACTATGTGAAGTTTTTGAATCATTGAAGCTCAAGATCATTACTGCTAATATTACTGCTGTTTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAACAAGAAGAGAGAGATTACTTGAAGATTGAAATAGAAAGAGCAATTGCAGGTCTTGTTAATCCCCAGAGCCCCATGAGTTTTTGA 735 43.67 MDNIGDAYMNYLQNSMLSADEFDSWAFDDRVSGYDDSSSSEGVRSPSTASKNIVLERDRRRKLNERLFALRSVVPNISKMDKASIIKDAIDYIQNLHEQERRVKTELYELESGQFKKFTGYDQFDPEVPLMQRSKRIKTDRFRCESFPSRTFPIEVMDLSVSYMGERMVVVSLTCCKRPDSMVRLCEVFESLKLKIITANITAVSGRLLKTVFIEAEQEERDYLKIEIERAIAGLVNPQSPMSF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32307592 32312428 + Sed0006766.1 Sed12g2173 733129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2173 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 112 IPR036638 GO:0046983(InterPro)
Sed12g2173 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 222 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed12g2173 244 SMART finulus 53 102 IPR011598 GO:0046983(InterPro)
Sed12g2173 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 113 - -
Sed12g2173 244 Pfam Helix-loop-helix DNA-binding domain 52 96 IPR011598 GO:0046983(InterPro)
Sed12g2173 244 Gene3D - 41 113 IPR036638 GO:0046983(InterPro)
Sed12g2173 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2173 Sed-Chr12:32307592 Sed12g2175 Sed-Chr12:32307592 2.30E-71 dispersed
Sed12g2173 Sed-Chr12:32307592 Sed12g2174 Sed-Chr12:32307592 5.30E-116 tandem
Sed11g0588 Sed-Chr11:6618461 Sed12g2173 Sed-Chr12:32307592 1.10E-38 wgd
Sed12g2173 Sed-Chr12:32307592 Sed08g0457 Sed-Chr8:2883240 1.50E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40284 PF00010 HLH 3.60E-11 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2173 - - - 0.0