Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2183 | ATGAGAGGTACTGGAAGGAGATTGACCCAGAAGGAATCTGGAAAATGTTCCCACTCCAAGGTGGAAACAGGGTCAGAGTTGGTTTTACCTCTGAAGTTGAAAAGGTGCAGCAAAATATCCAATTCCAAACAGAGAAAGCCAAGAGCGAAATCACATGTACAGGCAATTGGTTCAACATTCAAGAGGAGGCCTCTTCCTAAATCATTGAGCAAGGGGAATAAGAATGTGACAATTAGACACCTGGCTGGCCAAAAAAATCTGCGTAAAAAACTCGATCCAAAATCTTCCAAGGAATTAATTTTGTCAAAGCTTCAAGGTAGAAAATCCCTGCCATCGACTAGCACGAAAGTGAATGCTGAAAAAGTTGAGCCGGGGGCCAAGATGAAACAACAAAGGAGAAGGAGAAAGAAAAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGTCTACAGAGGAGAACAAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATCAAGCCAGAAAAGGAACTCCAGAGAGCCGTGAAGCAGATATTAAATTGCAAACTTGGAATCCGTGATGCTATTCGCGAGCTGGACATGCTTGGTTCAGTAGGATCCATTGAAGGCAATGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCGAAATGCAAGTTGCGTGAAGCTTTTCCGGACAATGATATTATACTTTGCGATGGGACATGCAACAGTGCTTTTCACCAAAAATGTATGGACCCACCATTAGACACAAAAAATATTCCTCCAGGTGATCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGAAAATATTAGAAGGAATGAATGCACATCTCGGCACAAGCTTCTCAACGAACATTAGTTGGGAGGATGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATTGCTGAATCATGAGGAAGATTGGCCCTCAGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAACCTTAGAGGGGATGAAAATGATAAGGATGTTTTGGAGGAGTCGAGTAGTTCAACTAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTAACTGATACAGATGGCATTAGATGTGAAGATCACTTTGGTGCTGGTAGTAGCTTAGTTTCTGATGGTTCCAATGAAGGGGAACTCACATGTGGTCGTCGGAAGCGGCAGGCTGTTGATTATAAAAACTTATATGTTGAAATGTTTGGAAAGGATGGTCCAGCACAAGAACTAGGTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAAAGAAAAGGAATGCGATGCTGCAAGTACTCTTATGTCGCTTTGTGAAAACGAAAAAAAGAGTGAAGACATTGACATGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGGTCGGTTTTCAGAATTCCTCGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAAAGACGTTAAGGAGAACCTCTCAAAAGAATTAGGCCTTGATGCCGAAAAGGTCAGTAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAGCTAGAAAGGTAGAGGGAGCAACACAGTCCCTTAGTCCTAATAAGACTTCCAACGAGTTCAGATTATCAGATACAAAGGAAATGTCTACGAATCTTCTTTCATCCGAGGATGTTCCCATAAAAGAACTGCAGCTGAAGTCGAGCAATAGTCGTTACAAGAAAAAGCAGCACAGAAAATCCTCACTGGTATCTTCCAACAACAATAAGGATGCTTTTGGTTTTGATGATGATATAAGCCTGAAGAGTCTCCTAAAGAATAGAAAAGCAAAGATAAAGAAGAGAGTTAAATTTGTAACTAGTGGTGGAAGTCAACAAGCAGAAATGGAGATGGAGAGGCTCTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGATTATCAAATAATAAAGATGATGGGATTTTAAATAAGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCAGTGGCAGTGTTAAAGGAAATGGTTTGA | 2133 | 40.27 | MRGTGRRLTQKESGKCSHSKVETGSELVLPLKLKRCSKISNSKQRKPRAKSHVQAIGSTFKRRPLPKSLSKGNKNVTIRHLAGQKNLRKKLDPKSSKELILSKLQGRKSLPSTSTKVNAEKVEPGAKMKQQRRRRKKKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAVKQILNCKLGIRDAIRELDMLGSVGSIEGNVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNSAFHQKCMDPPLDTKNIPPGDQGWFCKFCECKMKILEGMNAHLGTSFSTNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSADDDYDPDKKENLRGDENDKDVLEESSSSTSLSWSLDGEDLTDTDGIRCEDHFGAGSSLVSDGSNEGELTCGRRKRQAVDYKNLYVEMFGKDGPAQELGSEDEDWGPAKRRRKEKECDAASTLMSLCENEKKSEDIDMEAEKKLLNSQSRSVFRIPRYAVEKLRQVFADNELPSKDVKENLSKELGLDAEKVSKWFKNARYSALRARKVEGATQSLSPNKTSNEFRLSDTKEMSTNLLSSEDVPIKELQLKSSNSRYKKKQHRKSSLVSSNNNKDAFGFDDDISLKSLLKNRKAKIKKRVKFVTSGGSQQAEMEMERLCKIKGRLEIMKQKLLRLSNNKDDGILNKSNMFEQSIVYVPVAVLKEMV | 710 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 32352782 | 32359795 | - | Sed0011029.1 | Sed12g2183 | 733139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2183 | 710 | SUPERFAMILY | FYVE/PHD zinc finger | 230 | 297 | IPR011011 | - | |
Sed12g2183 | 710 | SUPERFAMILY | Homeodomain-like | 492 | 554 | IPR009057 | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 39 | 75 | - | - | |
Sed12g2183 | 710 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 288 | IPR013083 | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 436 | 457 | - | - | |
Sed12g2183 | 710 | SMART | PHD_3 | 239 | 292 | IPR001965 | - | |
Sed12g2183 | 710 | CDD | PHD_PRHA_like | 239 | 291 | IPR045876 | - | |
Sed12g2183 | 710 | FunFam | pathogenesis-related homeodomain protein | 492 | 556 | - | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Sed12g2183 | 710 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 291 | IPR019786 | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Sed12g2183 | 710 | CDD | homeodomain | 494 | 549 | IPR001356 | GO:0003677(InterPro) | |
Sed12g2183 | 710 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 294 | IPR019787 | - | |
Sed12g2183 | 710 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 32 | 704 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Sed12g2183 | 710 | SMART | HOX_1 | 492 | 554 | IPR001356 | GO:0003677(InterPro) | |
Sed12g2183 | 710 | Pfam | PHD-finger | 240 | 291 | IPR019787 | - | |
Sed12g2183 | 710 | Gene3D | - | 491 | 561 | - | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 440 | 457 | - | - | |
Sed12g2183 | 710 | Pfam | Homeodomain | 501 | 545 | IPR001356 | GO:0003677(InterPro) | |
Sed12g2183 | 710 | FunFam | pathogenesis-related homeodomain protein-like | 231 | 291 | - | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 350 | 368 | - | - | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 330 | 381 | - | - | |
Sed12g2183 | 710 | ProSiteProfiles | 'Homeobox' domain profile. | 490 | 550 | IPR001356 | GO:0003677(InterPro) | |
Sed12g2183 | 710 | MobiDBLite | consensus disorder prediction | 102 | 147 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0462 | Sed-Chr8:2906981 | Sed12g2183 | Sed-Chr12:32352782 | 3.70E-260 | dispersed | |
Sed08g0463 | Sed-Chr8:2909053 | Sed12g2183 | Sed-Chr12:32352782 | 4.20E-230 | dispersed | |
Sed12g2183 | Sed-Chr12:32352782 | Sed12g2185 | Sed-Chr12:32352782 | 0.00E+00 | dispersed | |
Sed12g2183 | Sed-Chr12:32352782 | Sed12g2184 | Sed-Chr12:32352782 | 0.00E+00 | tandem | |
Sed12g2183 | Sed-Chr12:32352782 | Sed08g0460 | Sed-Chr8:2906981 | 1.60E-298 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40287 | PF00628 | PHD | 5.20E-11 | CL0390 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2183 | - | - | - | 0.0 |