Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2183 ATGAGAGGTACTGGAAGGAGATTGACCCAGAAGGAATCTGGAAAATGTTCCCACTCCAAGGTGGAAACAGGGTCAGAGTTGGTTTTACCTCTGAAGTTGAAAAGGTGCAGCAAAATATCCAATTCCAAACAGAGAAAGCCAAGAGCGAAATCACATGTACAGGCAATTGGTTCAACATTCAAGAGGAGGCCTCTTCCTAAATCATTGAGCAAGGGGAATAAGAATGTGACAATTAGACACCTGGCTGGCCAAAAAAATCTGCGTAAAAAACTCGATCCAAAATCTTCCAAGGAATTAATTTTGTCAAAGCTTCAAGGTAGAAAATCCCTGCCATCGACTAGCACGAAAGTGAATGCTGAAAAAGTTGAGCCGGGGGCCAAGATGAAACAACAAAGGAGAAGGAGAAAGAAAAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGTCTACAGAGGAGAACAAGATACCTTATAATTAAAATGAAGCTAGAGCAGAACCTTATCGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATCAAGCCAGAAAAGGAACTCCAGAGAGCCGTGAAGCAGATATTAAATTGCAAACTTGGAATCCGTGATGCTATTCGCGAGCTGGACATGCTTGGTTCAGTAGGATCCATTGAAGGCAATGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCGAAATGCAAGTTGCGTGAAGCTTTTCCGGACAATGATATTATACTTTGCGATGGGACATGCAACAGTGCTTTTCACCAAAAATGTATGGACCCACCATTAGACACAAAAAATATTCCTCCAGGTGATCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGAAAATATTAGAAGGAATGAATGCACATCTCGGCACAAGCTTCTCAACGAACATTAGTTGGGAGGATGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCATTGCTGAATCATGAGGAAGATTGGCCCTCAGATGATTCTGCAGATGATGACTATGATCCAGATAAGAAGGAGAACCTTAGAGGGGATGAAAATGATAAGGATGTTTTGGAGGAGTCGAGTAGTTCAACTAGCTTGAGTTGGTCTTTAGATGGTGAGGATTTAACTGATACAGATGGCATTAGATGTGAAGATCACTTTGGTGCTGGTAGTAGCTTAGTTTCTGATGGTTCCAATGAAGGGGAACTCACATGTGGTCGTCGGAAGCGGCAGGCTGTTGATTATAAAAACTTATATGTTGAAATGTTTGGAAAGGATGGTCCAGCACAAGAACTAGGTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAAAGAAAAGGAATGCGATGCTGCAAGTACTCTTATGTCGCTTTGTGAAAACGAAAAAAAGAGTGAAGACATTGACATGGAAGCAGAGAAAAAACTTCTCAATTCGCAAAGTAGGTCGGTTTTCAGAATTCCTCGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAAAGACGTTAAGGAGAACCTCTCAAAAGAATTAGGCCTTGATGCCGAAAAGGTCAGTAAATGGTTCAAGAATGCACGATATTCTGCACTAAGAGCTAGAAAGGTAGAGGGAGCAACACAGTCCCTTAGTCCTAATAAGACTTCCAACGAGTTCAGATTATCAGATACAAAGGAAATGTCTACGAATCTTCTTTCATCCGAGGATGTTCCCATAAAAGAACTGCAGCTGAAGTCGAGCAATAGTCGTTACAAGAAAAAGCAGCACAGAAAATCCTCACTGGTATCTTCCAACAACAATAAGGATGCTTTTGGTTTTGATGATGATATAAGCCTGAAGAGTCTCCTAAAGAATAGAAAAGCAAAGATAAAGAAGAGAGTTAAATTTGTAACTAGTGGTGGAAGTCAACAAGCAGAAATGGAGATGGAGAGGCTCTGTAAAATTAAGGGTAGATTAGAGATAATGAAGCAGAAATTACTTAGATTATCAAATAATAAAGATGATGGGATTTTAAATAAGTCAAACATGTTTGAACAGTCTATTGTATATGTTCCAGTGGCAGTGTTAAAGGAAATGGTTTGA 2133 40.27 MRGTGRRLTQKESGKCSHSKVETGSELVLPLKLKRCSKISNSKQRKPRAKSHVQAIGSTFKRRPLPKSLSKGNKNVTIRHLAGQKNLRKKLDPKSSKELILSKLQGRKSLPSTSTKVNAEKVEPGAKMKQQRRRRKKKGKKEKVELDEASRLQRRTRYLIIKMKLEQNLIDAYSGEGWKGQSREKIKPEKELQRAVKQILNCKLGIRDAIRELDMLGSVGSIEGNVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNSAFHQKCMDPPLDTKNIPPGDQGWFCKFCECKMKILEGMNAHLGTSFSTNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSADDDYDPDKKENLRGDENDKDVLEESSSSTSLSWSLDGEDLTDTDGIRCEDHFGAGSSLVSDGSNEGELTCGRRKRQAVDYKNLYVEMFGKDGPAQELGSEDEDWGPAKRRRKEKECDAASTLMSLCENEKKSEDIDMEAEKKLLNSQSRSVFRIPRYAVEKLRQVFADNELPSKDVKENLSKELGLDAEKVSKWFKNARYSALRARKVEGATQSLSPNKTSNEFRLSDTKEMSTNLLSSEDVPIKELQLKSSNSRYKKKQHRKSSLVSSNNNKDAFGFDDDISLKSLLKNRKAKIKKRVKFVTSGGSQQAEMEMERLCKIKGRLEIMKQKLLRLSNNKDDGILNKSNMFEQSIVYVPVAVLKEMV 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32352782 32359795 - Sed0011029.1 Sed12g2183 733139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2183 710 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Sed12g2183 710 SUPERFAMILY Homeodomain-like 492 554 IPR009057 -
Sed12g2183 710 MobiDBLite consensus disorder prediction 39 75 - -
Sed12g2183 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
Sed12g2183 710 MobiDBLite consensus disorder prediction 436 457 - -
Sed12g2183 710 SMART PHD_3 239 292 IPR001965 -
Sed12g2183 710 CDD PHD_PRHA_like 239 291 IPR045876 -
Sed12g2183 710 FunFam pathogenesis-related homeodomain protein 492 556 - -
Sed12g2183 710 MobiDBLite consensus disorder prediction 1 19 - -
Sed12g2183 710 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Sed12g2183 710 MobiDBLite consensus disorder prediction 1 24 - -
Sed12g2183 710 CDD homeodomain 494 549 IPR001356 GO:0003677(InterPro)
Sed12g2183 710 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Sed12g2183 710 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 704 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Sed12g2183 710 SMART HOX_1 492 554 IPR001356 GO:0003677(InterPro)
Sed12g2183 710 Pfam PHD-finger 240 291 IPR019787 -
Sed12g2183 710 Gene3D - 491 561 - -
Sed12g2183 710 MobiDBLite consensus disorder prediction 440 457 - -
Sed12g2183 710 Pfam Homeodomain 501 545 IPR001356 GO:0003677(InterPro)
Sed12g2183 710 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Sed12g2183 710 MobiDBLite consensus disorder prediction 350 368 - -
Sed12g2183 710 MobiDBLite consensus disorder prediction 330 381 - -
Sed12g2183 710 ProSiteProfiles 'Homeobox' domain profile. 490 550 IPR001356 GO:0003677(InterPro)
Sed12g2183 710 MobiDBLite consensus disorder prediction 102 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0462 Sed-Chr8:2906981 Sed12g2183 Sed-Chr12:32352782 3.70E-260 dispersed
Sed08g0463 Sed-Chr8:2909053 Sed12g2183 Sed-Chr12:32352782 4.20E-230 dispersed
Sed12g2183 Sed-Chr12:32352782 Sed12g2185 Sed-Chr12:32352782 0.00E+00 dispersed
Sed12g2183 Sed-Chr12:32352782 Sed12g2184 Sed-Chr12:32352782 0.00E+00 tandem
Sed12g2183 Sed-Chr12:32352782 Sed08g0460 Sed-Chr8:2906981 1.60E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40287 PF00628 PHD 5.20E-11 CL0390 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2183 - - - 0.0