Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2195 ATGGCGGCGGCCGCAGCGACGGAGACGGTGGCCGGAAACAATGGCGGGAAGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGCTGCTCTTCTGAAATTCCCTTGGTTGAGAACATACTCAAAGGAATTGAAGGAGTTAAGGATATCAAAGTAATTGTTGCCACAAGAACTCTCATTGTTGTTCATGATAATCTCCTTCTTTCTCAAGCACAAATCGTAAAAGCCCTAAACCAAGCGAGGTTAGAAGCGAACGTTAGATCGTACGGCGATGAGAAAAGTTACCGGAAAAAATGGCCGAGCCCTTACACGGTGGCGAGTGGGCTGTTATTGCTTTTGTCGTTTCTGAAATATGTGAACCCTAATTTCCGGTGGCTGGCTTTGGCCGCCGTCGCCGCCGGAATCCCGCCGATTCTCCTCAAAAGCTTCGCCGCCGTTCGCAATCTCAGAATCTTTGACGTCAACTGTCTTGCTCTCCTTGCAGTGATTGGGACAATTGTGATCAAGGATTACTTGGAAGCTGCCACCATTGTCTTCCTCTTCTCAATTTCCCATTGGCTCGAGTCCAGAGCCAGCTACAAGGCCAGGGCTGTCATGTCGTCCCTTCTGAGCATTGCTCCTCAGAAAGCGGTTCTAGCCGATACCGGCGAAGTTGTCGGCGCCGATGAGGTCAAATTGGGGACTCTGCTAGCTGTGAAGGCCGGTGAAGAAATTCCCATTGATGGAATTGTTGTGGAAGGAAACTGTGAAGCGGATGAGAAAACGCTTACGGGTGAATCTTTCCCTGTTTCCAAACAAATTAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTTAGGACTACTGCTCTTGCTGAAGACTGTGTGGTGGCTAAAATGGCTAAGCTGGTTGAAGAGGCTGAGAACAATAAATCTAAAACTCATAGGATCATTGACAAATTGGCTAATTTCTATACTCCAGCTGTTATTATACTATCGGTTTGCACATTCGTGATTCCATTTGCTTTGAGACGTCCCAATCTCAGTTATTGGGTTCACATGGCCCTGGTCGTGTTAGTAAGCGCATGTCCCTGTGCACTCATCCTTTCCACACCAGTTGCATCTTTCTGTGCACTTTCTAAGGCAGCTACTTCTGGCCTTTTAATCAAAGGAGGCGATTACCTCGAAACTCTTGGAAAAATTAAGATCACGGCCTTCGATAAAACTGGAACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATGTAAGCTTAGAGACATTGCTATATTGGGTGTCGAGCATCGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATTCATTGATCCCAAACCTGAAAATGTGGAGGACTTTCAAAATTTTCCTGGAGAAGGTGTTCGAGGGCGGATTGATGGGAACGACATCCATATTGGAAATAAAAAAATTGCTACAAGAGCCAACTGTACAAAAGTCCCAGAGATCAAAGATGAAATGCAGAATGGAAAGACTGTTGGATACATATTCTGTGGAAGTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTCCAATCTCTTGGTATAAAAACAGCCATGCTCACTGGAGACAGTTCTGCAGCAGCCTTGCAAGCACAAGAAGAATTGGGAAAGGCTTTAAATACAGTCCATGCTGAACTTCTACCTGAAGACAAGACGAGACTCATCAATGAGTTTAAAAGAGAGGGACCAACAGCCATGATTGGTGATGGTTTAAATGATGCCCCTGCCTTGGCCACGGCTGATATTGGCATATCGATGGGAATTTCAGGATCGGCCCTCGCAATAGAAACTGCAGATGTAATTCTAATGACTAATGACATCCGAAAAATTCCAAAAGCCATCCGACTTGCAAGAAGAGCTAATCGTAAAGTAATTGAAAATGTGATTCTGTCGGTGGCTCTTAGGATTGCTGTACTCGGCCTGGCATTTGGTGGCCATCCACTTGTTTGGGCTGCAGTTCTTGCTGATGGTGGTGCCTGTTTGCTAGTTACCCTCAACAGTATGCTTCTACTGCGAGGAACTAACCGACGCAGAGGGAAAAAATCAGGCAAGTTTTCTGCTAGTCATTGTTCCTCCAAACATAAATGCTGTCATGTTAGTAGTCATTCAGACGAACGTGGTGGTCACACCCATGATCACGGTTGCAACCACGATAGTTCCCACTCTTCTAGTCATGGTCACCATCATCACGAGCACGAGAATTGCATGTCTCTCAAGAAAAGTCATGATGGTTGTGTAACTCAGAACTGTGCTTCCAAGTGTGATTCCAAGTTGAAAAATTTGAGTTCGAAAAGTAATAATGTGGACTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTGTAAAACCCTGTGAACATGGTCACACTCACACCCATGATCACAGGTGCAACAATGGCAGTTCCAACACTTCTAGTAATCACCACCATCACCACCACCACCATCATCATGAACGCGAGGACTGTGGCTCTCGAGAGAGAACTCATGATGGTTGTTTACCTCAGAACCATATTTCCAAATGTGATTCCGGGTTGGAAAATTCTAGTTCATGCTCTAAGGTAGATAATTCTCCAGGCAGTGTAAAACCCTCTCATCATGAACACTGCGTCCATAACAACCAGCCTGATGATCATGACCATCATGCCGACAGACATTGTGCTCTAAAGAACACGCGAGAACTTTGCTCGTCTCCGAATTCATGTGAGAATATCAAGTGCACAAACTCACCCGCCGGTCTCGATGGATCTGGAGGCAATGTTGAGCTCCATGAAGTTGAATGCTGTACTCATAATAGCCAGTCTGCTCAACACATTCATGAACATGACCATCATGCCCATTTTTCATGCGCCGATCATCATGTTGACAACAAACATTGCTGTATAGAAAGTACTCAAGAGTTCTGCTTATCTCAGAATTGTGCATCAAATTCATGTGAGGAAATCAAATGCACAAGCTCACCTGCAATCCCTGATGGATCTGCAGGTAGTTTTGAGCTCCATGATAGTGGATGCTGCACTCATAATAGCCAAACTCCTAAATGTGAGCATCATCCATGTGAGAATACCAAATGTGTGGACCCAACTGAAAAGCAACACCCACCTGAATGCAGTCTAGAACTCCTCCAAGACCATAAGCATTGCCACCAAGGAAGCTGTGACATTTCCAACTTTGTCGCGGAATCCGAGAAGCACGGGAAGAATTGCGCTGGACCTTGTAAATCAAGATCAGTAAGTCTTCCAAATGAAGGGTTTCATCCTCATTGCAAGGCATCGAATGGAGATAATGGTGGAGCGATCATAACTACCACAAGTTTCGAGCTTGAACCTGACCATTCGAGCCCGAAACCCGCCAGTACTTGTACGGCTTTGGTAAACAGAGAAACAAGCAACAATTGTGAAAGCTGCAGAAAGACAATCCGACAACTCAGAATTGGCAAATCTTGTGCAGGTTTGGAGAAGAGAGAATTTGGTGTGTGCTGTAGGAGCTACATGAAGGAGTGTTGTAGGAGACATAGTGATATCAGAATGGCTGTCCGTGGAGGATTGAACGAAATCATTATAGAATAA 3675 44.93 MAAAAATETVAGNNGGKLQKSYFDVLGICCSSEIPLVENILKGIEGVKDIKVIVATRTLIVVHDNLLLSQAQIVKALNQARLEANVRSYGDEKSYRKKWPSPYTVASGLLLLLSFLKYVNPNFRWLALAAVAAGIPPILLKSFAAVRNLRIFDVNCLALLAVIGTIVIKDYLEAATIVFLFSISHWLESRASYKARAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEEIPIDGIVVEGNCEADEKTLTGESFPVSKQINSTVWAGTINLNGYVTVRTTALAEDCVVAKMAKLVEEAENNKSKTHRIIDKLANFYTPAVIILSVCTFVIPFALRRPNLSYWVHMALVVLVSACPCALILSTPVASFCALSKAATSGLLIKGGDYLETLGKIKITAFDKTGTITRGEFMVTEFQVLDKDNVSLETLLYWVSSIESKSSHPMAAALVDHGRSLFIDPKPENVEDFQNFPGEGVRGRIDGNDIHIGNKKIATRANCTKVPEIKDEMQNGKTVGYIFCGSTAAGIFSLSDSCRTGAKEAMDELQSLGIKTAMLTGDSSAAALQAQEELGKALNTVHAELLPEDKTRLINEFKREGPTAMIGDGLNDAPALATADIGISMGISGSALAIETADVILMTNDIRKIPKAIRLARRANRKVIENVILSVALRIAVLGLAFGGHPLVWAAVLADGGACLLVTLNSMLLLRGTNRRRGKKSGKFSASHCSSKHKCCHVSSHSDERGGHTHDHGCNHDSSHSSSHGHHHHEHENCMSLKKSHDGCVTQNCASKCDSKLKNLSSKSNNVDSSSKVDDSAGSVKPCEHGHTHTHDHRCNNGSSNTSSNHHHHHHHHHHEREDCGSRERTHDGCLPQNHISKCDSGLENSSSCSKVDNSPGSVKPSHHEHCVHNNQPDDHDHHADRHCALKNTRELCSSPNSCENIKCTNSPAGLDGSGGNVELHEVECCTHNSQSAQHIHEHDHHAHFSCADHHVDNKHCCIESTQEFCLSQNCASNSCEEIKCTSSPAIPDGSAGSFELHDSGCCTHNSQTPKCEHHPCENTKCVDPTEKQHPPECSLELLQDHKHCHQGSCDISNFVAESEKHGKNCAGPCKSRSVSLPNEGFHPHCKASNGDNGGAIITTTSFELEPDHSSPKPASTCTALVNRETSNNCESCRKTIRQLRIGKSCAGLEKREFGVCCRSYMKECCRRHSDIRMAVRGGLNEIIIE 1224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32410702 32420582 - Sed0020208.1 Sed12g2195 733151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2195 1224 Pfam haloacid dehalogenase-like hydrolase 399 618 - -
Sed12g2195 1224 Gene3D - 394 655 IPR023214 -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 896 917 - -
Sed12g2195 1224 NCBIfam heavy metal translocating P-type ATPase 154 707 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Sed12g2195 1224 Gene3D - 414 536 IPR023299 GO:0000166(InterPro)
Sed12g2195 1224 SFLD p-type atpase 386 656 IPR044492 -
Sed12g2195 1224 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 16 931 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Sed12g2195 1224 SUPERFAMILY HMA, heavy metal-associated domain 16 90 IPR036163 GO:0046872(InterPro)
Sed12g2195 1224 ProSiteProfiles Heavy-metal-associated domain profile. 19 85 IPR006121 GO:0046872(InterPro)
Sed12g2195 1224 FunFam Putative cadmium/zinc-transporting ATPase 3 414 536 - -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 888 917 - -
Sed12g2195 1224 Pfam E1-E2 ATPase 213 382 - -
Sed12g2195 1224 NCBIfam HAD-IC family P-type ATPase 177 682 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed12g2195 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Sed12g2195 1224 SUPERFAMILY Calcium ATPase, transduction domain A 217 302 IPR008250 -
Sed12g2195 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 397 IPR023298 -
Sed12g2195 1224 NCBIfam cadmium family heavy metal-translocating P-type ATPase 154 709 - -
Sed12g2195 1224 FunFam Copper-transporting ATPase 1, putative 192 306 - -
Sed12g2195 1224 PRINTS P-type cation-transporting ATPase superfamily signature 604 623 - -
Sed12g2195 1224 PRINTS P-type cation-transporting ATPase superfamily signature 252 266 - -
Sed12g2195 1224 PRINTS P-type cation-transporting ATPase superfamily signature 403 417 - -
Sed12g2195 1224 PRINTS P-type cation-transporting ATPase superfamily signature 628 640 - -
Sed12g2195 1224 PRINTS P-type cation-transporting ATPase superfamily signature 550 560 - -
Sed12g2195 1224 FunFam Putative cadmium/zinc-transporting ATPase 3 15 88 - -
Sed12g2195 1224 SUPERFAMILY HAD-like 403 705 IPR036412 -
Sed12g2195 1224 PRINTS Copper-transporting ATPase signature 639 653 - -
Sed12g2195 1224 PRINTS Copper-transporting ATPase signature 582 599 - -
Sed12g2195 1224 PRINTS Copper-transporting ATPase signature 325 339 - -
Sed12g2195 1224 PRINTS Copper-transporting ATPase signature 194 212 - -
Sed12g2195 1224 CDD P-type_ATPase_HM 118 706 - -
Sed12g2195 1224 Gene3D - 191 306 - -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 816 832 - -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 797 863 - -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 797 814 - -
Sed12g2195 1224 MobiDBLite consensus disorder prediction 738 770 - -
Sed12g2195 1224 SFLD Haloacid Dehalogenase 386 656 - -
Sed12g2195 1224 ProSitePatterns Hypothetical cof family signature 2. 604 626 - -
Sed12g2195 1224 Gene3D - 16 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0566 Sed-Chr11:6105915 Sed12g2195 Sed-Chr12:32410702 1.90E-156 dispersed
Sed12g2195 Sed-Chr12:32410702 Sed14g1639 Sed-Chr14:24568967 3.20E-68 dispersed
Sed01g0376 Sed-Chr1:2868939 Sed12g2195 Sed-Chr12:32410702 7.90E-55 transposed
Sed05g3731 Sed-Chr5:45229701 Sed12g2195 Sed-Chr12:32410702 1.90E-34 transposed
Sed11g0565 Sed-Chr11:6066640 Sed12g2195 Sed-Chr12:32410702 1.10E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2195 K01534 - csv:101211188 1591.63