Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2212 ATGAATAATAATGATAATAATGATAATTCTTCATCTTCTTCAAATTGGTTGGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTCTTCCATAACCCCAATGATCTCTCTATCTTTTCCCCCAAGCTCGAGGATTTTCTCCGGGGACCTTCCCCGCCGCCGCCGCCGTCTCCGCCGCAGCAGCCTTTTCAGTTCTCTTCCCATCAAACCCCGGTGGGATTCTCCCATGACCACTCTCAGATTTGTGATTCTGATCTCAAAACCATCGCCGCCAGTTTCCTCCGTGGACACCCTCCGGCCACCCAGTTTTCCGATCAACCGCTTCAACATCTCCACGCGCCGCCTCCTCCTCCTCAGCCTGATACCCCGCCGCCGCCGCCGCCGCCGCAGACCAAGAAAGGTTCTGACACTTTCGGCCAACGTACTTCCATCTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAATATTGGGGTCCGACCACCACCACCAATTTTCCGGTGTCGGATTACGAAAAAGAGCTGGAGGACATGAAGAACATGACCAGACAAGAATTTGTGGCTTCATTAAGAAGAAAAAGTAGCGGTTTTTCTAGAGGAGCTTCTATTTACCGAGGTGTTACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTTTATCTTGGAACATTTAGCACTCAAGAAGAAGCAGCGGAGGCCTATGATATTGCCGCAATCAAATTTCGAGGGCTCAATGCAGTCACCAACTTTGACATCAGTCGTTACGATGTGAAGAGCATTGCTAGCAGCAACCTACCCATCGGAGGGATGTCGGGCACCAAATCCTCCAAAACTGCCTCTGACTCCACCATTGCCTCCGACATAAGCAACCGATCAACCGAAGAACGCAATGTCCAATATTCTCCACCATCGTCGACGACAACCTTCATGTCGTCTCAACCAAACAACTCTGCCCTAAGCTTTGCAATGCCCATCAAACCAGACCCATCAGATCAATACTGGTCCATGCTAGGCTACAACACCATCCCCTTCAACACATCTGTCTCCAAACCCGACAACATTCCACCGGCGTCGTTAACAATGTTTCATCAATCTCCAAATACCGATTCCACAATGTTTCCCACCGTTGACGAGCTACCCCCGAGCTGTTCTCCGCTCACCGAAACGAGTGAATATGGTAGCATTTACGTCCAGCAACAGTATGCAAGTACACCAATTGCATGTGAGATTGGGCAATCAATGAGGGGATTTGAAGCTCATGCAAAACCAAGGCTGTTTCAAACCCCAATATTTGGAATAGAATGA 1467 48.33 MNNNDNNDNSSSSSNWLAFSLSNNPNSLSLFHNPNDLSIFSPKLEDFLRGPSPPPPPSPPQQPFQFSSHQTPVGFSHDHSQICDSDLKTIAASFLRGHPPATQFSDQPLQHLHAPPPPPQPDTPPPPPPPQTKKGSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGTKSSKTASDSTIASDISNRSTEERNVQYSPPSSTTTFMSSQPNNSALSFAMPIKPDPSDQYWSMLGYNTIPFNTSVSKPDNIPPASLTMFHQSPNTDSTMFPTVDELPPSCSPLTETSEYGSIYVQQQYASTPIACEIGQSMRGFEAHAKPRLFQTPIFGIE 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32535371 32539395 - Sed0026066.1 Sed12g2212 733168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2212 488 SMART rav1_2 145 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 SMART rav1_2 247 311 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 MobiDBLite consensus disorder prediction 321 367 - -
Sed12g2212 488 ProSiteProfiles AP2/ERF domain profile. 247 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 FunFam AP2-like ethylene-responsive transcription factor 246 307 - -
Sed12g2212 488 PRINTS Ethylene responsive element binding protein signature 287 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 PRINTS Ethylene responsive element binding protein signature 146 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 52 365 - -
Sed12g2212 488 MobiDBLite consensus disorder prediction 98 146 - -
Sed12g2212 488 MobiDBLite consensus disorder prediction 48 63 - -
Sed12g2212 488 CDD AP2 246 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 CDD AP2 144 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 MobiDBLite consensus disorder prediction 111 133 - -
Sed12g2212 488 Gene3D AP2/ERF domain 247 307 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 Gene3D AP2/ERF domain 145 213 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 SUPERFAMILY DNA-binding domain 144 213 IPR016177 GO:0003677(InterPro)
Sed12g2212 488 FunFam AP2-like ethylene-responsive transcription factor ANT 144 213 - -
Sed12g2212 488 Pfam AP2 domain 146 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 Pfam AP2 domain 248 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 ProSiteProfiles AP2/ERF domain profile. 145 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2212 488 MobiDBLite consensus disorder prediction 44 80 - -
Sed12g2212 488 SUPERFAMILY DNA-binding domain 246 307 IPR016177 GO:0003677(InterPro)
Sed12g2212 488 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0715 Sed-Chr11:10510413 Sed12g2212 Sed-Chr12:32535371 1.60E-98 dispersed
Sed12g1105 Sed-Chr12:7215771 Sed12g2212 Sed-Chr12:32535371 2.70E-46 dispersed
Sed12g2212 Sed-Chr12:32535371 Sed13g1074 Sed-Chr13:9313707 8.40E-97 dispersed
Sed12g2212 Sed-Chr12:32535371 Sed13g1073 Sed-Chr13:9313707 8.40E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40291 PF00847 AP2 3.60E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2212 K09285 - csv:101210453 560.836