Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2212 | ATGAATAATAATGATAATAATGATAATTCTTCATCTTCTTCAAATTGGTTGGCTTTTTCTCTCTCTAACAATCCCAACTCTCTCTCTCTCTTCCATAACCCCAATGATCTCTCTATCTTTTCCCCCAAGCTCGAGGATTTTCTCCGGGGACCTTCCCCGCCGCCGCCGCCGTCTCCGCCGCAGCAGCCTTTTCAGTTCTCTTCCCATCAAACCCCGGTGGGATTCTCCCATGACCACTCTCAGATTTGTGATTCTGATCTCAAAACCATCGCCGCCAGTTTCCTCCGTGGACACCCTCCGGCCACCCAGTTTTCCGATCAACCGCTTCAACATCTCCACGCGCCGCCTCCTCCTCCTCAGCCTGATACCCCGCCGCCGCCGCCGCCGCCGCAGACCAAGAAAGGTTCTGACACTTTCGGCCAACGTACTTCCATCTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTATGGGATAACAGTTGCAGAAGAGAGGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCTAGAGCTTATGATCTCGCCGCTCTCAAATATTGGGGTCCGACCACCACCACCAATTTTCCGGTGTCGGATTACGAAAAAGAGCTGGAGGACATGAAGAACATGACCAGACAAGAATTTGTGGCTTCATTAAGAAGAAAAAGTAGCGGTTTTTCTAGAGGAGCTTCTATTTACCGAGGTGTTACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTTTATCTTGGAACATTTAGCACTCAAGAAGAAGCAGCGGAGGCCTATGATATTGCCGCAATCAAATTTCGAGGGCTCAATGCAGTCACCAACTTTGACATCAGTCGTTACGATGTGAAGAGCATTGCTAGCAGCAACCTACCCATCGGAGGGATGTCGGGCACCAAATCCTCCAAAACTGCCTCTGACTCCACCATTGCCTCCGACATAAGCAACCGATCAACCGAAGAACGCAATGTCCAATATTCTCCACCATCGTCGACGACAACCTTCATGTCGTCTCAACCAAACAACTCTGCCCTAAGCTTTGCAATGCCCATCAAACCAGACCCATCAGATCAATACTGGTCCATGCTAGGCTACAACACCATCCCCTTCAACACATCTGTCTCCAAACCCGACAACATTCCACCGGCGTCGTTAACAATGTTTCATCAATCTCCAAATACCGATTCCACAATGTTTCCCACCGTTGACGAGCTACCCCCGAGCTGTTCTCCGCTCACCGAAACGAGTGAATATGGTAGCATTTACGTCCAGCAACAGTATGCAAGTACACCAATTGCATGTGAGATTGGGCAATCAATGAGGGGATTTGAAGCTCATGCAAAACCAAGGCTGTTTCAAACCCCAATATTTGGAATAGAATGA | 1467 | 48.33 | MNNNDNNDNSSSSSNWLAFSLSNNPNSLSLFHNPNDLSIFSPKLEDFLRGPSPPPPPSPPQQPFQFSSHQTPVGFSHDHSQICDSDLKTIAASFLRGHPPATQFSDQPLQHLHAPPPPPQPDTPPPPPPPQTKKGSDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEKELEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGTKSSKTASDSTIASDISNRSTEERNVQYSPPSSTTTFMSSQPNNSALSFAMPIKPDPSDQYWSMLGYNTIPFNTSVSKPDNIPPASLTMFHQSPNTDSTMFPTVDELPPSCSPLTETSEYGSIYVQQQYASTPIACEIGQSMRGFEAHAKPRLFQTPIFGIE | 488 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 32535371 | 32539395 | - | Sed0026066.1 | Sed12g2212 | 733168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2212 | 488 | SMART | rav1_2 | 145 | 217 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | SMART | rav1_2 | 247 | 311 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 321 | 367 | - | - | |
Sed12g2212 | 488 | ProSiteProfiles | AP2/ERF domain profile. | 247 | 305 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | FunFam | AP2-like ethylene-responsive transcription factor | 246 | 307 | - | - | |
Sed12g2212 | 488 | PRINTS | Ethylene responsive element binding protein signature | 287 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | PRINTS | Ethylene responsive element binding protein signature | 146 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 52 | 365 | - | - | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 98 | 146 | - | - | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 48 | 63 | - | - | |
Sed12g2212 | 488 | CDD | AP2 | 246 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | CDD | AP2 | 144 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 111 | 133 | - | - | |
Sed12g2212 | 488 | Gene3D | AP2/ERF domain | 247 | 307 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | Gene3D | AP2/ERF domain | 145 | 213 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | SUPERFAMILY | DNA-binding domain | 144 | 213 | IPR016177 | GO:0003677(InterPro) | |
Sed12g2212 | 488 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 144 | 213 | - | - | |
Sed12g2212 | 488 | Pfam | AP2 domain | 146 | 203 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | Pfam | AP2 domain | 248 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | ProSiteProfiles | AP2/ERF domain profile. | 145 | 211 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 44 | 80 | - | - | |
Sed12g2212 | 488 | SUPERFAMILY | DNA-binding domain | 246 | 307 | IPR016177 | GO:0003677(InterPro) | |
Sed12g2212 | 488 | MobiDBLite | consensus disorder prediction | 64 | 78 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed11g0715 | Sed-Chr11:10510413 | Sed12g2212 | Sed-Chr12:32535371 | 1.60E-98 | dispersed | |
Sed12g1105 | Sed-Chr12:7215771 | Sed12g2212 | Sed-Chr12:32535371 | 2.70E-46 | dispersed | |
Sed12g2212 | Sed-Chr12:32535371 | Sed13g1074 | Sed-Chr13:9313707 | 8.40E-97 | dispersed | |
Sed12g2212 | Sed-Chr12:32535371 | Sed13g1073 | Sed-Chr13:9313707 | 8.40E-97 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40291 | PF00847 | AP2 | 3.60E-13 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2212 | K09285 | - | csv:101210453 | 560.836 |