Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2223 ATGGCGGCGGATCCATCGCCGGAATTCATATTCCGGTCAAAACTCCCGGACATCCCAATCCCCAACCACGTCCCCATACACACATACTGCTTCGAAAAGCTCTCCCAATTCAAACACCGTCCATGCCTAATCAACGCCCCCACGGGCGACGTCTACACCTACGGTGAAGTCGACGCGACAGCCCGCCGAGTCGCTGCCGGGCTCAGCAAGCTCGGCATCGAAAAAGGGGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCATATTCTCATTCCTCGGCGCCTCCCACATCGGCGCCGCCACCACCATGGCGAACCCGTTCTTCACCCCGGCTGAGATTGCGAAACACGCTGCCTCGGCCGCCCCGAAGCTGATCATAACCCAGCCCGAATTCGCCGAGAAAGTGAAGAATCTCACCACACAGGTCATAGTAACCGAAGGAGAGTCAAGCAATTTCTCAGCGTTGTTGAGCGCTGACGTGGAAATGCCAGATGTGAAAATAAGTCCAAACGACGTCGTGGCGCTGCCGTTTTCGTCGGGCACGACGGGCCTACCAAAGGGAGTTATGCTGACTCACAAGGGACTTGTTACCAGCGTGGCGCAACAGGTGGACGGTGAAAATCCACATCTGCATATCCGAAGCGACGACGTCGTTCTGTGCCTGCTCCCTTTGTTTCACATTTATTCGCTGAATTCCATCATGATGTGTTCGTTGCGAGTGGGAGCCGCGATTTTGATCGTGCGGAAATTCGATGTTGATTCTCTTGTGGAGTTGGTGAGGAAATATAAGGTGACCATTGCGCCCTTCGTGCCTCCGATTGTCCTCGCCGTGGCGAAGAGCCCTGCAGTCGAGGCTGCCGACATGTCGTCGATACGGATGGTGTTGTCCGGAGCGGCGCCGCTCGGGAAGGAACTTGAAGATGCGTTTCGAGCCAAGCTTCCGCATGCGATTCTCGGGCAGGGATATGGAATGACGGAGTCGGGGTCAGTGTTGACGATGTCGTTGGCATTTGCGAAGGAGAGGTTTGAGATAAAATCGGGAGCTTGCGGAACGGTGATGAGAAATTCAGAGATGAAGATCATAAACCCTCAAACCGGAGCTTCTCTTCCAAGGAACCAACCTGGGGAGATTTGGATTAGAAGCCCTCAGATGATGAAAGGATACCTCAACGACGAAGAAGCCACAAAGGGCATAATCGACGAAGACGGATGGCTGCACACCGGCGACATAGGTTTCGTCGACGACGACGACGAAGTCTTCATCGTCGATCGCATCAAGGAACTGATCAAGTACAAAGGCTACCAGGTTGCGCCGGCGGAGTTGGAAGCTCTGCTCATTTCTCACGGCCAGATCGCCGATGCTGCCGTTATGCCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTGCGACATCAACGAGGATGAAATCAAGCAATATATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGTGTGTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGAGGAGACAACTTAGAGCTATGCTTGAAGCCACTATTCCAAATTAG 1602 52.93 MAADPSPEFIFRSKLPDIPIPNHVPIHTYCFEKLSQFKHRPCLINAPTGDVYTYGEVDATARRVAAGLSKLGIEKGDVIMLLLQNSPQFIFSFLGASHIGAATTMANPFFTPAEIAKHAASAAPKLIITQPEFAEKVKNLTTQVIVTEGESSNFSALLSADVEMPDVKISPNDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLHIRSDDVVLCLLPLFHIYSLNSIMMCSLRVGAAILIVRKFDVDSLVELVRKYKVTIAPFVPPIVLAVAKSPAVEAADMSSIRMVLSGAAPLGKELEDAFRAKLPHAILGQGYGMTESGSVLTMSLAFAKERFEIKSGACGTVMRNSEMKIINPQTGASLPRNQPGEIWIRSPQMMKGYLNDEEATKGIIDEDGWLHTGDIGFVDDDDEVFIVDRIKELIKYKGYQVAPAELEALLISHGQIADAAVMPMKDEVAGEVPVAFIVRSDGCDINEDEIKQYISKQVVFYKRINRVFFVDSIPKSPSGKILRRQLRAMLEATIPN 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32627305 32633326 + Sed0005142.1 Sed12g2223 733179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2223 533 FunFam 4-coumarate--CoA ligase 2 429 530 - -
Sed12g2223 533 SUPERFAMILY Acetyl-CoA synthetase-like 18 529 - -
Sed12g2223 533 Gene3D - 428 531 IPR045851 -
Sed12g2223 533 Gene3D - 4 427 IPR042099 -
Sed12g2223 533 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 524 - GO:0016405(PANTHER)
Sed12g2223 533 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 428 - -
Sed12g2223 533 Pfam AMP-binding enzyme 32 391 IPR000873 -
Sed12g2223 533 Pfam AMP-binding enzyme C-terminal domain 442 517 IPR025110 -
Sed12g2223 533 CDD 4CL 20 523 - -
Sed12g2223 533 ProSitePatterns Putative AMP-binding domain signature. 177 188 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0708 Sed-Chr7:5273414 Sed12g2223 Sed-Chr12:32627305 1.20E-189 dispersed
Sed09g1419 Sed-Chr9:38064399 Sed12g2223 Sed-Chr12:32627305 9.70E-195 dispersed
Sed10g0061 Sed-Chr10:370625 Sed12g2223 Sed-Chr12:32627305 5.30E-26 dispersed
Sed11g0511 Sed-Chr11:4996873 Sed12g2223 Sed-Chr12:32627305 5.50E-198 dispersed
Sed12g0909 Sed-Chr12:5691690 Sed12g2223 Sed-Chr12:32627305 7.80E-07 dispersed
Sed12g1451 Sed-Chr12:13173188 Sed12g2223 Sed-Chr12:32627305 2.60E-14 dispersed
Sed12g1452 Sed-Chr12:13173188 Sed12g2223 Sed-Chr12:32627305 2.80E-11 dispersed
Sed12g2223 Sed-Chr12:32627305 Sed13g2178 Sed-Chr13:26382796 2.20E-98 dispersed
Sed12g2223 Sed-Chr12:32627305 Sed08g0480 Sed-Chr8:3055295 5.80E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2223 K01904 - csv:101218077 825.854