Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2225 ATGAGGGAGAAAAGGGGTTTGGCGAATGGAGAAGATGAGCTACCGGAGCCGAAGCGACCAGCTCTAGCTAGTGTGATTGTAGAAGCCCTGAAGGTAGATAGCTTACAAAAGCTCTGCTCTTCATTGGAACCAATACTCCGTAGAGTGGTTAGTGAGGACCTGGAGCGTGCTTTGTCTAAGATAGGTCCTGCTAGAATTGGTGGAAGATATTTCTCAAATCCTAATATAATTTTACAAGATTTTGAATGTTTATTGTTCTTTCTTGATGCACCAGCTACAAGATTGTCTCTTCCCTTGTTCACTGGAGGAAAAGTGGAAGGTGAACAAGGTGCAACAATTCATGTTGTTCTTGTTGATGCTAACACAGGCCATGCAGTAACGTCTGGACCCGAAGACTTGACTAAATTGGACATTGTGAACTATAACATAACCCAAGTTTTATTAGGACTTGGAACCTCCCATTCTCTGGAGAATACTCTTTTGAAAACTATTTCCGCATTGCAGGTATATGTAGATACACTAGTGAATAAAGCGTTTGAAAATTGGAATCAAGTTGTAGAGTACGATGGAAATTCACTTTTGAGCTCTGAGCAGCAGAAGCCAAATGCATCTCGAAATGACTTTCAAGGAGGTCATCTTGGTCTTTCTAATACTCTAGATCATGGGTCACTGTCCAGCATGCCAGTATCAGTTCAACCTCACCAGCCTGTAGTGGGCTCAGGACTTCCAATTGCAGGTAACCACGCTTGTAGGTCTGTTAACGTCCACGACGAGCGTTTCTCATTGCCACCATTCATGCCTTCACCAATGCCAAATTTTGATGATCGCAACCGCTCCGGGAAAGCCGTAGTAGGTTGGTTGAAGATCAAAGCTGCAATGAGGTGGGGGTTCTTCTTCAGGAAGAAAGCAGCTGAGAAACGCGCACAGATTGTCGAGTTGGATGAGGAATACAGCTTGGATTTTGATCACAAACAAGAAATTGTTGAAATGGATGAAAGAAACGGCGATTTGTTCTCGCTGCCAGAAGATGTAATAGGCAGCATCTTATCTCTCACAACTCCGTCGGAGGCCGCCCGGTCATCCACGGTTTGCCGGAGTTTCAATGCCGCGGCGCAGTCCGATGTCGCTTGGAACTCCTTCCTTCCTTCTGATACCGACTTCATTATCTCTCTCGCCGAAACTAATGATCTGCATTTTGATCCCGTTTCGAGTTCCAAGAAACACATCTTCCTCTCCCTCTGCCGTACCCCGCTGCTCTTTCATGACCGCACTTAG 1275 45.33 MREKRGLANGEDELPEPKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEDLERALSKIGPARIGGRYFSNPNIILQDFECLLFFLDAPATRLSLPLFTGGKVEGEQGATIHVVLVDANTGHAVTSGPEDLTKLDIVNYNITQVLLGLGTSHSLENTLLKTISALQVYVDTLVNKAFENWNQVVEYDGNSLLSSEQQKPNASRNDFQGGHLGLSNTLDHGSLSSMPVSVQPHQPVVGSGLPIAGNHACRSVNVHDERFSLPPFMPSPMPNFDDRNRSGKAVVGWLKIKAAMRWGFFFRKKAAEKRAQIVELDEEYSLDFDHKQEIVEMDERNGDLFSLPEDVIGSILSLTTPSEAARSSTVCRSFNAAAQSDVAWNSFLPSDTDFIISLAETNDLHFDPVSSSKKHIFLSLCRTPLLFHDRT 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32641582 32647508 - Sed0021047.1 Sed12g2225 733181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2225 424 Pfam F-box-like 339 380 IPR001810 GO:0005515(InterPro)
Sed12g2225 424 CDD F-box_AtSKIP3-like 340 382 - -
Sed12g2225 424 SMART fbox_2 340 380 IPR001810 GO:0005515(InterPro)
Sed12g2225 424 SUPERFAMILY F-box domain 324 413 IPR036047 GO:0005515(InterPro)
Sed12g2225 424 ProSiteProfiles F-box domain profile. 334 380 IPR001810 GO:0005515(InterPro)
Sed12g2225 424 PANTHER OS02G0177800 PROTEIN 2 139 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Sed12g2225 424 Pfam Calmodulin binding protein-like N-terminal domain 93 140 IPR046831 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1899 Sed-Chr12:30164682 Sed12g2225 Sed-Chr12:32641582 2.60E-09 dispersed
Sed12g2225 Sed-Chr12:32641582 Sed12g1900 Sed-Chr12:30164682 7.80E-06 dispersed
Sed12g2225 Sed-Chr12:32641582 Sed12g2226 Sed-Chr12:32648816 1.00E-34 tandem
Sed12g2225 Sed-Chr12:32641582 Sed08g0507 Sed-Chr8:3327510 2.40E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2225 - - - 0.0