Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2238 ATGATTCAATGCTTCTTGCTTCTGCTTATGGGAATGGAATTCAGGAAGGAAAAGCTCGTTAGGTTTTATTCTGATCACATATCTGCCACTGGAAACAACAATGAAGCAGTGCAACTTGAGAAGTCGCCATCGAAATACTATATTTCGTCGTCAACATTCTTAATACCCGATAATGGACTAGGGGGAAGCCAAAGTAATTTCGTAGAAACTTTCAGAACTGAGAAATCCAAGGTGTTTCCAGAGGACTATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCGAAATTGTTTTGAAATGGAACTGGGTGTTGATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTGTATCTTTACTTGCCTGCTTTGGTTGGGAATGGGAATTCTTCATGTGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACAATTGCGGATTTTTTTTATCTTCTACACGTGATTATTAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGAGTTTTTGGGAGAGGTGAACTTGTGATGGATTCGAAGATGATAGCAAAGAGGTATATTAGATCTGACTTTTTTGTCGATCTTATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGCTCATCATACCTGCAACAAGAAGTCGCCTTACTGATCATAAAAACAACGCTCTTGCACTCATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATATTCCCTCTAAGTTCAGAAATCATCAAAGCAAATGGATTCGTTACGAAAACCGCTTGGGCAGGAGCTGCTTATAATCTTCTTCTCTATATGTTGGCTAGCCATGTTCTAGGTGCTATATGGTATTTGCTGTCAGTTGATAGATATACATCATGCTGGAAATCATTTTGTTGGAAGAAGGAATATAATCCAATAGAATGTGACCTAAGATATTTTGATTGTGATGCATTTAACCTTAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCACAAATGGAGTTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTAGTCTCTTCGAACTTCATTGAAAAGTACTTCTACTGTTTGTGGTGGGGATTGCAAAACCTAAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGCGAGACACTGTTTGCTGTGCTTATTGCCATCTTAGGCCTTGTACTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTCACTGTGAGGCTTGAAGAATGGAGACTGAAACGAAGAGACACCGAAGAGTGGATGAGGCATCGACAACTACCTTATGACTTGAAACGACGTGTTCGACGCTTCGTACAATTTAAGTGGGTAGCAACTCGAGGAGTTGCTGAAGAATCCATCTTGCAAAGCTTGCCTGCTGACCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTCCCTTTCTTCGCACAGATGGACGATCAGCTACTTGATGCAATATGTGAACGCCTGGTATCCTCATTGAGCACTGAGGGTACCTACATTGTACGAGAGGGTGACCCGGTAACCGAGATGTTATTCATTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACTCCATAATGCTGTGTCCAGGTGACTTTTGTGGCGAGGAGCTACTTTCTTGGGCCTTGCACCCAAAATCTGCCGCCAACTTGCCGTCCTCAACTAGAACAGTCGAAGCGCTCAATGAAGTTGAAGCTTTCGCACTCCGTGCTGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCATAGTAAAAAGTTGCAGCACACATTTCGGTTTTACTCGCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCATCGCTATAAGAAAAGGATGATAGCAAAAGATCTTTTAATGAAGGAATCATTTAGATTATTTGAACAAGTGAGTCAAGTAACGGATGAAACTGGCCAAGGAGGGAATCAATTTTCTGTTGCTTCAAATCCCCCTCAGGCAAAAATGTATCTGGATGTTACCTTGCTTGCTTCAAGGTTTGCTGCAAACACAAGGAGAAATGTTCAGAGAATGAGAGATGACATGCCAAAGTTACAGAAGCCGGAAGAACCTGACTTTTCCATCGAGCCGGATAGATAA 2214 42.1 MIQCFLLLLMGMEFRKEKLVRFYSDHISATGNNNEAVQLEKSPSKYYISSSTFLIPDNGLGGSQSNFVETFRTEKSKVFPEDYEPWSKRILDPGSEIVLKWNWVLICSCLLALFVDPLYLYLPALVGNGNSSCVRTDWKLRIVVTCFRTIADFFYLLHVIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYIRSDFFVDLIATLPLPQIVIWLIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGFVTKTAWAGAAYNLLLYMLASHVLGAIWYLLSVDRYTSCWKSFCWKKEYNPIECDLRYFDCDAFNLNDRNTWANSTLVFDKCGTNGVFKYGIFGNAMSKNVVSSNFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPYDLKRRVRRFVQFKWVATRGVAEESILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSIMLCPGDFCGEELLSWALHPKSAANLPSSTRTVEALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWHRYKKRMIAKDLLMKESFRLFEQVSQVTDETGQGGNQFSVASNPPQAKMYLDVTLLASRFAANTRRNVQRMRDDMPKLQKPEEPDFSIEPDR 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32810980 32817290 - Sed0019933.1 Sed12g2238 733194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2238 737 SUPERFAMILY Voltage-gated potassium channels 95 420 - -
Sed12g2238 737 FunFam Cyclic nucleotide-gated ion channel 1 425 489 - -
Sed12g2238 737 Pfam Ion transport protein 101 425 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g2238 737 SMART cnmp_10 498 629 IPR000595 -
Sed12g2238 737 MobiDBLite consensus disorder prediction 712 737 - -
Sed12g2238 737 ProSiteProfiles cAMP/cGMP binding motif profile. 498 581 IPR000595 -
Sed12g2238 737 Pfam Cyclic nucleotide-binding domain 521 610 IPR000595 -
Sed12g2238 737 FunFam Cyclic nucleotide-gated ion channel 1 496 614 - -
Sed12g2238 737 SUPERFAMILY cAMP-binding domain-like 428 620 IPR018490 -
Sed12g2238 737 Gene3D Helix hairpin bin 426 489 - -
Sed12g2238 737 Gene3D - 99 423 - -
Sed12g2238 737 PRINTS EAG/ELK/ERG potassium channel family signature 159 168 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2238 737 PRINTS EAG/ELK/ERG potassium channel family signature 367 384 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2238 737 PRINTS EAG/ELK/ERG potassium channel family signature 393 404 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2238 737 PRINTS EAG/ELK/ERG potassium channel family signature 276 286 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2238 737 PRINTS EAG/ELK/ERG potassium channel family signature 411 420 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2238 737 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 72 717 - -
Sed12g2238 737 Gene3D Jelly Rolls 496 616 IPR014710 -
Sed12g2238 737 CDD CAP_ED 498 629 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2238 Sed-Chr12:32810980 Sed13g2104 Sed-Chr13:25724430 1.60E-272 dispersed
Sed11g2035 Sed-Chr11:34389559 Sed12g2238 Sed-Chr12:32810980 1.50E-104 transposed
Sed13g0274 Sed-Chr13:1906762 Sed12g2238 Sed-Chr12:32810980 3.70E-100 transposed
Sed12g2238 Sed-Chr12:32810980 Sed08g0535 Sed-Chr8:3524581 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2238 K27629 - csv:101218643 1326.23