Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2238 | ATGATTCAATGCTTCTTGCTTCTGCTTATGGGAATGGAATTCAGGAAGGAAAAGCTCGTTAGGTTTTATTCTGATCACATATCTGCCACTGGAAACAACAATGAAGCAGTGCAACTTGAGAAGTCGCCATCGAAATACTATATTTCGTCGTCAACATTCTTAATACCCGATAATGGACTAGGGGGAAGCCAAAGTAATTTCGTAGAAACTTTCAGAACTGAGAAATCCAAGGTGTTTCCAGAGGACTATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCGAAATTGTTTTGAAATGGAACTGGGTGTTGATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTGTATCTTTACTTGCCTGCTTTGGTTGGGAATGGGAATTCTTCATGTGTGAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTCCGGACAATTGCGGATTTTTTTTATCTTCTACACGTGATTATTAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGAGTTTTTGGGAGAGGTGAACTTGTGATGGATTCGAAGATGATAGCAAAGAGGTATATTAGATCTGACTTTTTTGTCGATCTTATTGCCACCCTGCCTCTCCCTCAGATTGTCATCTGGCTCATCATACCTGCAACAAGAAGTCGCCTTACTGATCATAAAAACAACGCTCTTGCACTCATTGTTCTGCTTCAATATATTCCGAGATTGTATTTGATATTCCCTCTAAGTTCAGAAATCATCAAAGCAAATGGATTCGTTACGAAAACCGCTTGGGCAGGAGCTGCTTATAATCTTCTTCTCTATATGTTGGCTAGCCATGTTCTAGGTGCTATATGGTATTTGCTGTCAGTTGATAGATATACATCATGCTGGAAATCATTTTGTTGGAAGAAGGAATATAATCCAATAGAATGTGACCTAAGATATTTTGATTGTGATGCATTTAACCTTAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGACAAATGTGGCACAAATGGAGTTTTCAAGTATGGCATTTTTGGGAATGCAATGTCAAAGAATGTAGTCTCTTCGAACTTCATTGAAAAGTACTTCTACTGTTTGTGGTGGGGATTGCAAAACCTAAGTTCATATGGACAGAATTTGGAAACAACCACTTTCATTGGCGAGACACTGTTTGCTGTGCTTATTGCCATCTTAGGCCTTGTACTATTTGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTCACTGTGAGGCTTGAAGAATGGAGACTGAAACGAAGAGACACCGAAGAGTGGATGAGGCATCGACAACTACCTTATGACTTGAAACGACGTGTTCGACGCTTCGTACAATTTAAGTGGGTAGCAACTCGAGGAGTTGCTGAAGAATCCATCTTGCAAAGCTTGCCTGCTGACCTTCGACGCGATATTCAGTGCCACCTATGTCTAGATCTTGTCCGACGAGTCCCTTTCTTCGCACAGATGGACGATCAGCTACTTGATGCAATATGTGAACGCCTGGTATCCTCATTGAGCACTGAGGGTACCTACATTGTACGAGAGGGTGACCCGGTAACCGAGATGTTATTCATTATCCGAGGCAGATTGGAGAGTTCTACTACAAATGGAGGTCGCTCTGGTTTCTTCAACTCCATAATGCTGTGTCCAGGTGACTTTTGTGGCGAGGAGCTACTTTCTTGGGCCTTGCACCCAAAATCTGCCGCCAACTTGCCGTCCTCAACTAGAACAGTCGAAGCGCTCAATGAAGTTGAAGCTTTCGCACTCCGTGCTGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCATAGTAAAAAGTTGCAGCACACATTTCGGTTTTACTCGCATCATTGGAGAACATGGGCAGCTTGCTTTATTCAGGCTGCTTGGCATCGCTATAAGAAAAGGATGATAGCAAAAGATCTTTTAATGAAGGAATCATTTAGATTATTTGAACAAGTGAGTCAAGTAACGGATGAAACTGGCCAAGGAGGGAATCAATTTTCTGTTGCTTCAAATCCCCCTCAGGCAAAAATGTATCTGGATGTTACCTTGCTTGCTTCAAGGTTTGCTGCAAACACAAGGAGAAATGTTCAGAGAATGAGAGATGACATGCCAAAGTTACAGAAGCCGGAAGAACCTGACTTTTCCATCGAGCCGGATAGATAA | 2214 | 42.1 | MIQCFLLLLMGMEFRKEKLVRFYSDHISATGNNNEAVQLEKSPSKYYISSSTFLIPDNGLGGSQSNFVETFRTEKSKVFPEDYEPWSKRILDPGSEIVLKWNWVLICSCLLALFVDPLYLYLPALVGNGNSSCVRTDWKLRIVVTCFRTIADFFYLLHVIIKFRTAYVAPSSRVFGRGELVMDSKMIAKRYIRSDFFVDLIATLPLPQIVIWLIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGFVTKTAWAGAAYNLLLYMLASHVLGAIWYLLSVDRYTSCWKSFCWKKEYNPIECDLRYFDCDAFNLNDRNTWANSTLVFDKCGTNGVFKYGIFGNAMSKNVVSSNFIEKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPYDLKRRVRRFVQFKWVATRGVAEESILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSIMLCPGDFCGEELLSWALHPKSAANLPSSTRTVEALNEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWHRYKKRMIAKDLLMKESFRLFEQVSQVTDETGQGGNQFSVASNPPQAKMYLDVTLLASRFAANTRRNVQRMRDDMPKLQKPEEPDFSIEPDR | 737 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 32810980 | 32817290 | - | Sed0019933.1 | Sed12g2238 | 733194 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2238 | 737 | SUPERFAMILY | Voltage-gated potassium channels | 95 | 420 | - | - | |
Sed12g2238 | 737 | FunFam | Cyclic nucleotide-gated ion channel 1 | 425 | 489 | - | - | |
Sed12g2238 | 737 | Pfam | Ion transport protein | 101 | 425 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed12g2238 | 737 | SMART | cnmp_10 | 498 | 629 | IPR000595 | - | |
Sed12g2238 | 737 | MobiDBLite | consensus disorder prediction | 712 | 737 | - | - | |
Sed12g2238 | 737 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 498 | 581 | IPR000595 | - | |
Sed12g2238 | 737 | Pfam | Cyclic nucleotide-binding domain | 521 | 610 | IPR000595 | - | |
Sed12g2238 | 737 | FunFam | Cyclic nucleotide-gated ion channel 1 | 496 | 614 | - | - | |
Sed12g2238 | 737 | SUPERFAMILY | cAMP-binding domain-like | 428 | 620 | IPR018490 | - | |
Sed12g2238 | 737 | Gene3D | Helix hairpin bin | 426 | 489 | - | - | |
Sed12g2238 | 737 | Gene3D | - | 99 | 423 | - | - | |
Sed12g2238 | 737 | PRINTS | EAG/ELK/ERG potassium channel family signature | 159 | 168 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed12g2238 | 737 | PRINTS | EAG/ELK/ERG potassium channel family signature | 367 | 384 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed12g2238 | 737 | PRINTS | EAG/ELK/ERG potassium channel family signature | 393 | 404 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed12g2238 | 737 | PRINTS | EAG/ELK/ERG potassium channel family signature | 276 | 286 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed12g2238 | 737 | PRINTS | EAG/ELK/ERG potassium channel family signature | 411 | 420 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed12g2238 | 737 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 72 | 717 | - | - | |
Sed12g2238 | 737 | Gene3D | Jelly Rolls | 496 | 616 | IPR014710 | - | |
Sed12g2238 | 737 | CDD | CAP_ED | 498 | 629 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g2238 | Sed-Chr12:32810980 | Sed13g2104 | Sed-Chr13:25724430 | 1.60E-272 | dispersed | |
Sed11g2035 | Sed-Chr11:34389559 | Sed12g2238 | Sed-Chr12:32810980 | 1.50E-104 | transposed | |
Sed13g0274 | Sed-Chr13:1906762 | Sed12g2238 | Sed-Chr12:32810980 | 3.70E-100 | transposed | |
Sed12g2238 | Sed-Chr12:32810980 | Sed08g0535 | Sed-Chr8:3524581 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2238 | K27629 | - | csv:101218643 | 1326.23 |