Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2259 ATGTTCTTGAGAAACCAAGCCAAACAAATGGGGTTCTTCTTTATCTCTCTTATGAATTTCATCACAGCCATGGCTCCAAAACTCTTCTGTTTGATCCTTTTTTCTTCTGCTTTCATTTGCTTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTTTGATTCATGTGAAGACCGCATTGAATGATCCGCACGGTGTTCTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGACAATGATCACTTGTTCCCCTGAAAGCCTTGTTATAGGACTTGGAGCTCCGAGCCAGTCTCTTTCTGGAAGCTTGTCTGGAGCAATTGGGAACCTTACAAATCTTCGCCAAGTGATGTTGCAGAACAACAATATCTCTGGCCCAATTCCCATTGAACTTGGAACTCTCACGTTGCTTCAAACATTAGATCTCTCTAACAATCGGTTCTCTGGTCCTATTCCACCATCCTTTGGTCAGCTTAACGGTCTACGTTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCATTTCTTGTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGATTCCAGCCAGGACAATCAATGTGGTGGGAAATCCAATTATTTGTGGAAGTAGTTCTAGTGAAGTATGCAGCTCAGCCAATGCCATTACTCTTTCTTTCTCTCTAAATTCGTCCCCCGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTTAGCCTTAGCTGTGCTTTTCTGATACTCATAGCACTTGGAATTCTTTGGCACAGAAAAACTCACAAGACCAAAACCATCCTAGACATCAATGACAATCTAGATGTTGGACTAGTGCGCTTAGGAAACCTGAGAAACTTCACTTTCAAGAAGCTCCAGTTGGCAACAGACCATTTTAGTTCCAAAAATATACTTGGTGCTGGAGGATTCGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAGCGGCTAAAAGATGCAACCGGTACCACTGGGGAGTCGCAGTTCCGCACGGAGTTGGAGATGATTAGCCTCGCAGTTCACCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCAGTTCTCACGAGAGACTCTTAGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACAAGGAAGAGAATAGCAATTGGTGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGCGATCCCAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTCGATGACTTCTGCGAAGCCGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCCGACTCTCATGTGACCACTGCGGTTCGCGGCACTGTTGGGCACATCGCTCCGGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGCTTTGGCATTCTTTTGATAGAACTAATAACTGGGATGAGAGCTCTTGAACTTGGAAAAACAATTAACCAAAAAGGTGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATAGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACCCAGTATTTACCCACTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGAGATGGCCTTGTTGAGAAATGGGCTGCATCCCAAACTCATACTGTCTCAAACTTCAACCTCTTTCATTCACAGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTCAAGAATAATGGCAATGATAGAGAACATTCAAGCATGTTAAGTTTGACAATGGACGACGACGACGACGAGCGTTCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1980 45.35 MFLRNQAKQMGFFFISLMNFITAMAPKLFCLILFSSAFICFSYEPRNPEVEALIHVKTALNDPHGVLSNWDEDSVDPCSWTMITCSPESLVIGLGAPSQSLSGSLSGAIGNLTNLRQVMLQNNNISGPIPIELGTLTLLQTLDLSNNRFSGPIPPSFGQLNGLRYLRVNNNSLSGPFLVSLAKIPQLAFLDLSFNNLSGPVPVIPARTINVVGNPIICGSSSSEVCSSANAITLSFSLNSSPGRLRSKRIAVALGVSLSCAFLILIALGILWHRKTHKTKTILDINDNLDVGLVRLGNLRNFTFKKLQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDATGTTGESQFRTELEMISLAVHRNLLRLIGYCASSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALELGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPTHRPKMSEVVRMLEGDGLVEKWAASQTHTVSNFNLFHSQNSCKSTYNPTNAFKNNGNDREHSSMLSLTMDDDDDERSLDSYAMELSGPR 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32916373 32921464 - Sed0010266.1 Sed12g2259 733215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2259 659 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 228 - -
Sed12g2259 659 SUPERFAMILY Protein kinase-like (PK-like) 296 584 IPR011009 -
Sed12g2259 659 SMART serkin_6 314 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2259 659 Gene3D Ribonuclease Inhibitor 46 228 IPR032675 -
Sed12g2259 659 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Sed12g2259 659 SUPERFAMILY L domain-like 47 244 - -
Sed12g2259 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2259 659 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 28 659 - -
Sed12g2259 659 MobiDBLite consensus disorder prediction 617 633 - -
Sed12g2259 659 FunFam Somatic embryogenesis receptor kinase 1 283 390 - -
Sed12g2259 659 FunFam Somatic embryogenesis receptor-like kinase 1 391 603 - -
Sed12g2259 659 Pfam Protein tyrosine and serine/threonine kinase 317 583 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2259 659 Gene3D Transferase(Phosphotransferase) domain 1 391 603 - -
Sed12g2259 659 MobiDBLite consensus disorder prediction 617 659 - -
Sed12g2259 659 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Sed12g2259 659 Gene3D Phosphorylase Kinase; domain 1 285 390 - -
Sed12g2259 659 ProSiteProfiles Protein kinase domain profile. 314 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2259 659 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Sed12g2259 659 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g2070 Sed-Chr11:34677154 Sed12g2259 Sed-Chr12:32916373 5.40E-181 dispersed
Sed11g2071 Sed-Chr11:34677154 Sed12g2259 Sed-Chr12:32916373 1.50E-180 dispersed
Sed12g2259 Sed-Chr12:32916373 Sed12g2261 Sed-Chr12:32917183 2.90E-249 dispersed
Sed12g2259 Sed-Chr12:32916373 Sed12g2260 Sed-Chr12:32916373 2.80E-260 tandem
Sed12g2259 Sed-Chr12:32916373 Sed08g0554 Sed-Chr8:3707909 4.90E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80036 PF07714 PK_Tyr_Ser-Thr 1.20E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2259 - - - 0.0