Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2260 ATGATAATAACCTGCACTTTGTTATTTTGTCTTGTAATGAGTAGGAGGGTGAACAATAATAGCTTGTCCGGGCCATTTCTTGTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGATTCCAGCCAGGACAATCAATGTGGTGGGAAATCCAATTATTTGTGGAAGTAGTTCTAGTGAAGTATGCAGCTCAGCCAATGCCATTACTCTTTCTTTCTCTCTAAATTCGTCCCCCGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTTAGCCTTAGCTGTGCTTTTCTGATACTCATAGCACTTGGAATTCTTTGGCACAGAAAAACTCACAAGACCAAAACCATCCTAGACATCAATGTAGACAATCTAGATGTTGGACTAGTGCGCTTAGGAAACCTGAGAAACTTCACTTTCAAGAAGCTCCAGTTGGCAACAGACCATTTTAGTTCCAAAAATATACTTGGTGCTGGAGGATTCGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAGCGGCTAAAAGATGCAACCGGTACCACTGGGGAGTCGCAGTTCCGCACGGAGTTGGAGATGATTAGCCTCGCAGTTCACCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCAGTTCTCACGAGAGACTCTTAGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACAAGGAAGAGAATAGCAATTGGTGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGCGATCCCAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTCGATGACTTCTGCGAAGCCGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCCGACTCTCATGTGACCACTGCGGTTCGCGGCACTGTTGGGCACATCGCTCCGGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGCTTTGGCATTCTTTTGATAGAACTAATAACTGGGATGAGAGCTCTTGAACTTGGAAAAACAATTAACCAAAAAGGTGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGAATTGCTTGTGGACAGAGAGCTAGGGAACAACTATGATCAGATAGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACCCAGTATTTACCCACTCACCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGAGATGGCCTTGTTGAGAAATGGGCTGCATCCCAAACTCATACTGTCTCAAACTTCAACCTCTTTCATTCACAGAACAGCTGCAAAAGTACATACAACCCCACAAATGCATTCAAGAATAATGGCAATGATAGAGAACATTCAAGCATGTTAAGTTTGACAATGGACGACGACGACGACGAGCGTTCTTTAGACTCCTATGCCATGGAACTCTCCGGTCCAAGATAG 1530 45.36 MIITCTLLFCLVMSRRVNNNSLSGPFLVSLAKIPQLAFLDLSFNNLSGPVPVIPARTINVVGNPIICGSSSSEVCSSANAITLSFSLNSSPGRLRSKRIAVALGVSLSCAFLILIALGILWHRKTHKTKTILDINVDNLDVGLVRLGNLRNFTFKKLQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDATGTTGESQFRTELEMISLAVHRNLLRLIGYCASSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALELGKTINQKGAMLEWVKKIQQEKKVELLVDRELGNNYDQIEVGEMLQVALLCTQYLPTHRPKMSEVVRMLEGDGLVEKWAASQTHTVSNFNLFHSQNSCKSTYNPTNAFKNNGNDREHSSMLSLTMDDDDDERSLDSYAMELSGPR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32916373 32920075 - Sed0010266.3 Sed12g2260 733216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2260 509 MobiDBLite consensus disorder prediction 467 509 - -
Sed12g2260 509 FunFam Somatic embryogenesis receptor-like kinase 1 241 453 - -
Sed12g2260 509 SUPERFAMILY Protein kinase-like (PK-like) 145 434 IPR011009 -
Sed12g2260 509 Gene3D Phosphorylase Kinase; domain 1 135 240 - -
Sed12g2260 509 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 509 - -
Sed12g2260 509 MobiDBLite consensus disorder prediction 467 483 - -
Sed12g2260 509 ProSitePatterns Protein kinases ATP-binding region signature. 170 192 IPR017441 GO:0005524(InterPro)
Sed12g2260 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2260 509 FunFam Somatic embryogenesis receptor kinase 1 134 240 - -
Sed12g2260 509 Gene3D Ribonuclease Inhibitor 12 82 IPR032675 -
Sed12g2260 509 ProSiteProfiles Protein kinase domain profile. 164 439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2260 509 Gene3D Transferase(Phosphotransferase) domain 1 241 453 - -
Sed12g2260 509 SMART serkin_6 164 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2260 509 Pfam Protein tyrosine and serine/threonine kinase 167 433 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2260 509 SUPERFAMILY L domain-like 17 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0554 Sed-Chr8:3707909 Sed12g2260 Sed-Chr12:32916373 3.40E-231 dispersed
Sed08g0555 Sed-Chr8:3707909 Sed12g2260 Sed-Chr12:32916373 2.50E-239 dispersed
Sed12g2260 Sed-Chr12:32916373 Sed13g0980 Sed-Chr13:7562481 6.50E-116 dispersed
Sed12g2259 Sed-Chr12:32916373 Sed12g2260 Sed-Chr12:32916373 2.80E-260 tandem
Sed12g2260 Sed-Chr12:32916373 Sed12g2261 Sed-Chr12:32917183 4.50E-186 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80037 PF07714 PK_Tyr_Ser-Thr 6.40E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2260 - - - 0.0