Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2261 ATGTTCTTGAGAAACCAAGCCAAACAAATGGGGTTCTTCTTTATCTCTCTTATGAATTTCATCACAGCCATGGCTCCAAAACTCTTCTGTTTGATCCTTTTTTCTTCTGCTTTCATTTGCTTTTCCTATGAACCTCGAAACCCAGAAGTGGAAGCTTTGATTCATGTGAAGACCGCATTGAATGATCCGCACGGTGTTCTCAGCAATTGGGATGAAGACTCTGTGGACCCTTGCAGTTGGACAATGATCACTTGTTCCCCTGAAAGCCTTGTTATAGGACTTGGAGCTCCGAGCCAGTCTCTTTCTGGAAGCTTGTCTGGAGCAATTGGGAACCTTACAAATCTTCGCCAAGTGATGTTGCAGAACAACAATATCTCTGGCCCAATTCCCATTGAACTTGGAACTCTCACGTTGCTTCAAACATTAGATCTCTCTAACAATCGGTTCTCTGGTCCTATTCCACCATCCTTTGGTCAGCTTAACGGTCTACGTTACCTGAGGGTGAACAATAATAGCTTGTCCGGGCCATTTCTTGTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGATTCCAGCCAGGACAATCAATGTGGTGGGAAATCCAATTATTTGTGGAAGTAGTTCTAGTGAAGTATGCAGCTCAGCCAATGCCATTACTCTTTCTTTCTCTCTAAATTCGTCCCCCGGAAGACTCAGGTCCAAAAGAATAGCAGTGGCACTTGGGGTTAGCCTTAGCTGTGCTTTTCTGATACTCATAGCACTTGGAATTCTTTGGCACAGAAAAACTCACAAGACCAAAACCATCCTAGACATCAATGTAGACAATCTAGATGTTGGACTAGTGCGCTTAGGAAACCTGAGAAACTTCACTTTCAAGAAGCTCCAGTTGGCAACAGACCATTTTAGTTCCAAAAATATACTTGGTGCTGGAGGATTCGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTGAAGCGGCTAAAAGATGCAACCGGTACCACTGGGGAGTCGCAGTTCCGCACGGAGTTGGAGATGATTAGCCTCGCAGTTCACCGCAATTTGCTTCGGTTAATTGGTTATTGTGCCAGTTCTCACGAGAGACTCTTAGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGAAAACCAGCCTTGGACTGGAACACAAGGAAGAGAATAGCAATTGGTGCTGCAAGGGGTCTGCTCTACCTCCATGAGCAATGCGATCCCAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTCGATGACTTCTGCGAAGCCGTAGTTGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCCGACTCTCATGTGACCACTGCGGTTCGCGGCACTGTTGGGCACATCGCTCCGGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGCTTTGGCATTCTTTTGATAGAACTAATAACTGGGATGAGAGCTCTTGAACTTGGAAAAACAATTAACCAAAAAGGTGCCATGCTTGAGTGGGTATGTCTTAGCCATAATCTAAAAGTAAAAGCTATCTTTAGCTAA 1632 45.04 MFLRNQAKQMGFFFISLMNFITAMAPKLFCLILFSSAFICFSYEPRNPEVEALIHVKTALNDPHGVLSNWDEDSVDPCSWTMITCSPESLVIGLGAPSQSLSGSLSGAIGNLTNLRQVMLQNNNISGPIPIELGTLTLLQTLDLSNNRFSGPIPPSFGQLNGLRYLRVNNNSLSGPFLVSLAKIPQLAFLDLSFNNLSGPVPVIPARTINVVGNPIICGSSSSEVCSSANAITLSFSLNSSPGRLRSKRIAVALGVSLSCAFLILIALGILWHRKTHKTKTILDINVDNLDVGLVRLGNLRNFTFKKLQLATDHFSSKNILGAGGFGNVYKGKLGDGTMVAVKRLKDATGTTGESQFRTELEMISLAVHRNLLRLIGYCASSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDFCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALELGKTINQKGAMLEWVCLSHNLKVKAIFS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32917183 32921464 - Sed0010266.2 Sed12g2261 733217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2261 543 SUPERFAMILY Protein kinase-like (PK-like) 296 519 IPR011009 -
Sed12g2261 543 FunFam Somatic embryogenesis receptor-like kinase 1 392 542 - -
Sed12g2261 543 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524(InterPro)
Sed12g2261 543 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 28 537 - -
Sed12g2261 543 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Sed12g2261 543 Pfam Protein kinase domain 316 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2261 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2261 543 FunFam Somatic embryogenesis receptor kinase 1 285 391 - -
Sed12g2261 543 SMART serkin_6 315 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2261 543 Gene3D Phosphorylase Kinase; domain 1 286 391 - -
Sed12g2261 543 Gene3D Transferase(Phosphotransferase) domain 1 392 541 - -
Sed12g2261 543 Gene3D Ribonuclease Inhibitor 46 228 IPR032675 -
Sed12g2261 543 ProSiteProfiles Protein kinase domain profile. 315 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2261 543 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 228 - -
Sed12g2261 543 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515(InterPro)
Sed12g2261 543 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515(InterPro)
Sed12g2261 543 SUPERFAMILY L domain-like 47 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2259 Sed-Chr12:32916373 Sed12g2261 Sed-Chr12:32917183 2.90E-249 dispersed
Sed12g2261 Sed-Chr12:32917183 Sed14g1517 Sed-Chr14:23471039 1.80E-111 dispersed
Sed12g2260 Sed-Chr12:32916373 Sed12g2261 Sed-Chr12:32917183 4.50E-186 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80038 PF00069 Pkinase 1.70E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2261 - - - 0.0