Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2279 ATGGCGGCGAAAACCGAAGGAAAAGCGATCGGAATCGACCTCGGCACCACCTACAGCTGCGTCGGCGTTTGGCTCAACGATCGCGTCGAAATCATCCCCAACGATCAAGGTAATCGAACCACTCCTTCTTATGTTGCTTTCACTGATACGGAGCGATTGATCGGCGACGCGGCCAAGAACCAGGTCGCTATGAATCCTCAGAACACCGTCTTCGATGCGAAGCGCTTGATCGGCCGGCGCCTCTCCGACCTCTCTGTTCAGAGCGATATGAAGCTCTGGCCGTTTAAGGTCGTCGCCGGACCTGGCGATAAGCCGATGATCATCGTTAACTATAAAGGCGAGGAGAAGCAGTTCGCTCCCGAGGAGATATCTTCTATGGTTCTGATTAAGATGAGAGAAATCGCAGAAGCATTTCTAGGTCAAAGTATCAACAACGCTGTAATCACAGTTCCTGCTTATTTCAACGACTCGCAGCGTCAAGCCACGAAAGACGCCGGCGCTATCGCCGGCATCAATGTCATGCGGATCATCAACGAGCCGACGGCTGCCGCGATTGCGTACGGTCTGGACAAAAAGGCCTCTCGTAAAGGCGAACAGAACGTGCTGATCTTCGATCTCGGCGGCGGCACGTTCGACGTGTCTCTCTTGACGATAGAGGAAGGGATTTTCGAGGTGAAGGCGACTGCTGGCGATACGCATCTCGGCGGGGAGGATTTCGACAATAGATTGGTGAATCATTTTGTGACGGAGTTCAGGAGGAAGAACAAGAAGGATATAAGCGGGAATGCGAGGGCGCTGAGGAGGCTGAGGACGGCATGTGAGCGGGCGAAAAGAGCGCTGTCGTCGACTACGCAAACGACGATTGAAGTCGATTCCCTGTACGAAGGGATTGATTTCAACGCGACGATAACGAGGGCGAGATTTGAAGAACTGTGTATGGATATGTTCATGAGGTGTATGGAGCCGGTGGAGAAATGTATTCGTGATGCGAAAATTGATAAGAGCCAAGTTCATGAAGTGGTGTTGGTCGGTGGATCGACGAGGATTCCGAAAGTTCAGCAGCTTTTGCAGGATTACTTCAATGGAAAGGAGCTGTGTAAGAGTATCAACCCTGATGAGGCTGTTGCTTATGGTGCTGCAGTTCAGGCTGCAATTCTAAGTGGAGAAGGAGATGAGAAAGTTCAAGACCTGTTACTGCTGGACGTGACGCCGCTGAGTCTCGGTCTCGAGACAGCCGGCGGAGTAATGACAGTCCTAATTCCAAGGAACACAACAATCCCAACCAAGAAAGAACAAATCTTCTCCACATACTCCGACAACCAACCCGGAGTCCTAATCCAAGTCTATGAAGGAGAGCGAGCCCAAACCAAAGACAACAATCTCCTCGGAAAGTTCGAGCTCACTGGCATTCCTCCTGCACCCAGAGGCGTCCCGCAAGTCAACGTCGTCTTCGACATTGACGCCAACGGGATTCTGAATGTGACGGCGGAGGACAAGACAGCGGGGGTGAAGAACAAGATCACGATAACGAACGACAAGGGGCGGATGAGCAAGGACGAGATCGAGAGGCTGGTGAAGGAGGCGGAGAAGTACCGGGCGGAGGACGAAGATGTGAAGAAGAAGGTGGAGGCGAAGAATGGGCTGGAGAACTATGCTTATAACATGAGGAATACTGTGAGGGATGAGAAATTTGCAGAGAAGTTGAATGCTGAGGATATGCAGAAGATTGAGAAGTCTGTAGAGGAGACAATTGAGTGGCTGGATAGGAACCAGTTGGCTGAGGTTGATGAGCTTGAGGACAAGCTTAAGGAGCTGGAGGGTATTTGTAATCCCATCATTGCTAAGATGTATCAGGGCGGCGCCGGCGGCGGTGCTCCGATGGGTGATGATATGCCTGCTGGGGCTTCCGCCTCGTCCGGCGGCGGTGCCGGGCCGAAGATTGAGGAGGTTGATTAA 1956 52.15 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDLSVQSDMKLWPFKVVAGPGDKPMIIVNYKGEEKQFAPEEISSMVLIKMREIAEAFLGQSINNAVITVPAYFNDSQRQATKDAGAIAGINVMRIINEPTAAAIAYGLDKKASRKGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFRRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFNATITRARFEELCMDMFMRCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERAQTKDNNLLGKFELTGIPPAPRGVPQVNVVFDIDANGILNVTAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYRAEDEDVKKKVEAKNGLENYAYNMRNTVRDEKFAEKLNAEDMQKIEKSVEETIEWLDRNQLAEVDELEDKLKELEGICNPIIAKMYQGGAGGGAPMGDDMPAGASASSGGGAGPKIEEVD 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33009967 33013080 + Sed0013415.1 Sed12g2279 733235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2279 651 Gene3D - 192 366 - -
Sed12g2279 651 FunFam Heat shock 70 kDa 391 545 - -
Sed12g2279 651 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Sed12g2279 651 Coils Coil 266 286 - -
Sed12g2279 651 Coils Coil 588 608 - -
Sed12g2279 651 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Sed12g2279 651 FunFam Heat shock protein 70 10 196 - -
Sed12g2279 651 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed12g2279 651 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Sed12g2279 651 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Sed12g2279 651 FunFam heat shock 70 kDa protein-like 71 126 - -
Sed12g2279 651 FunFam Heat shock protein 70 546 619 - -
Sed12g2279 651 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Sed12g2279 651 FunFam Heat shock 70 kDa protein 197 262 - -
Sed12g2279 651 Gene3D - 71 126 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 477 493 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 396 415 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 36 48 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 209 219 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 8 21 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 58 66 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 369 389 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 146 166 - -
Sed12g2279 651 PRINTS 70kDa heat shock protein signature 337 353 - -
Sed12g2279 651 FunFam Heat shock 70 kDa 235 318 - -
Sed12g2279 651 Gene3D Actin; Chain A, domain 4 235 318 - -
Sed12g2279 651 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Sed12g2279 651 MobiDBLite consensus disorder prediction 621 651 - -
Sed12g2279 651 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Sed12g2279 651 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Sed12g2279 651 Coils Coil 514 541 - -
Sed12g2279 651 Gene3D - 545 619 IPR029048 -
Sed12g2279 651 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Sed12g2279 651 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Sed12g2279 651 SUPERFAMILY Actin-like ATPase domain 196 388 IPR043129 -
Sed12g2279 651 Gene3D - 10 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0075 Sed-Chr3:458241 Sed12g2279 Sed-Chr12:33009967 8.40E-259 dispersed
Sed05g0697 Sed-Chr5:5239685 Sed12g2279 Sed-Chr12:33009967 3.40E-226 dispersed
Sed07g1161 Sed-Chr7:8695297 Sed12g2279 Sed-Chr12:33009967 1.30E-153 dispersed
Sed12g2279 Sed-Chr12:33009967 Sed14g0474 Sed-Chr14:4743015 5.10E-307 dispersed
Sed12g2279 Sed-Chr12:33009967 Sed01g2763 Sed-Chr1:22813534 2.2e-310 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2279 K03283 - csv:101215564 1164.06