Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2280 ATGGAAGCCAGCGCTGGACTTGTCGCCGGGTCTCACAACCGCAACGAGCTTGTTGTCATCCATGGCCATGAGGAGCCAAAGCCATTGAAGAACTTGGATGGTCAAAATTGTGAGATTTGTGGTGATGAAGTGGGGCTAACTGTGGATGGTGATCTGTTTGTTGCCTGTAATGAATGTGGTTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGTCAACTGTGTCCTCAGTGTAAAACTAGATACAAGCGACTCAAAGGGAGTCCGAGGGTCGAGGGAGACGACGATGAAGAAGACATCGATGACATTGAACATGAGTTCAACATGGATGACGAGAGGAACAATCCGAGTCATATGGCAGAAGCCATGCTTCATGGAAAGATGAGCTATGGTAGAGGGCCAGATGATGATGAAAATGCACAATATGGAAGAACACTGCCAGAAAATGGTGAGCTTCCTTTGTCGTCTCAAGGTTATGGAGATCAGATGTTGTCATCTTCATTGCACAAACGTGTGCATCCGTATCCAGTTTCTGAACCAGGGAGTGCGAGATGGAATGAAAAGAGAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAAATGCAGCAAGGAAATCTTGGGCCTGAACTTGATGATGCCAATGACCCTGACATGTCTATGATTGATGCAGCTAGACAGCCACTATCAAGGAAGGTACCAATAGCATCTAGCAAAATTAATCCTTACCGGATGGTTATTGTGGCTCGGCTTGCTATTCTCGCCTTATTCCTTCGGTATCGGATTTTAAATCCAGTGCATGACGCATTGGGTTTGTGGTTAACTTCTGTAATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCTAAATGGTTCCCAATCGATCGCGAAACCTACTTAGATCGTCTGTCCCTCAGGTATGAACGAGAAGGTGAACCTAATTTGCTTGCTCCGGTGGATATCTTCGTCAGTACTGTAGATCCAATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCAATCTTGGCCATGGACTATCCAGTTGATAAGATTTCATGCTACGTTTCAGACGATGGAGCTTCTATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCCAGAAAATGGGTGCCTTTTTGTAAGAAGTTCTCAATAGAACCTCGAGCACCGGAAATGTACTTCTCCGAAAAAATTGATTATCTCAAGGACAAAGTCCAGCCAACATTTGTAAAGGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTTAGGATAAATGCTCAAGTAGCCAAAGCAATAAAAGTACCCACAGAAGGATGGATAATGCAAGATGGCACACCATGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATTCAAGTCTTTCTAGGTCACAGTGGAGGCCTTGATGTAGAAGGGAATGAACTTCCTCGCTTAGTTTACGTATCTCGTGAGAAAAGACCAGGTTTCCAACATCACAAGAAAGCCGGTGCCATGAATTCCTTGATTCGTGTCTCTGCAGTGCTTACAAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAGGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAAAAAGTTTGTTATGTACAATTTCCACAAAGATTTGATGGGATAGATAGGAACGATCGTTATGCCAACAGAAATACAGTCTTCTTTGATATTAACATGAGAGGTTTAGATGGAATTCAAGGTCCTGTATATGTCGGCACAGGGTGCGTCTTTAGGAGGCATGCTTTATATGGTTATGAGCCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGACTGTTGTCCATGCTTTGGAAGTCGCAAGAAGCTTAAGAGCTCTAAAAGTGGGATAGATGGAGATGCTGCAGTGATGGAAGATGACAAGGAGTTACTAATGTCACAAATGAATTTTGAAAAGAAATTCGGACAGTCATCCATTTTTGTTACCTCAACTTTGATGGAAGAAGGCGGTGTTCCACCATCCTCAAGTCCAGCAGCCCTGCTTAAGGAGGCAATTCATGTTATCAGTTGCGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAGATGCATTGTCGTGGCTGGAGATCTATATACTGCATACCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATTAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCGCTCGGGTCTATTGAAATCTTTTTCAGCAATCACTGCCCTGTTTGGTATGGTTACAAGGGTGGGAACCTAAAGTGGCTGGAGAGATTTGCATATGTCAACACAACTGTCTACCCTTTCACATCAATACCACTTCTCGCCTACTGTTCCCTCCCTGCAATATGCCTTCTCACCGATAAGTTTATTATGCCACCGATAAGCACTTTAGCAAGTCTCTATTTCATTTCCTTGTTTCTTTCCATTATTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTTAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGAATTTCAGCTCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTTTTGGCTGGAATTGATACTAGCTTCACAGTTACATCAAAGGCAACAGATGACGAAGACTTCGGAGAATTATACGCCTTCAAATGGACCACTCTGCTAATACCTCCAACAACCATTTTGATCATTAACATTGTTGGGGTGGTTGCAGGCATCTCAGATGCCATAAACAATGGTTATCAGTCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCCGACAAAACCGCACCCCGACTATAGTCGTCATATGGTCCGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACCAAGAAATGTGGACTAAATTGCTGA 3099 43.59 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQNCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNMDDERNNPSHMAEAMLHGKMSYGRGPDDDENAQYGRTLPENGELPLSSQGYGDQMLSSSLHKRVHPYPVSEPGSARWNEKREEGWKDRMDDWKMQQGNLGPELDDANDPDMSMIDAARQPLSRKVPIASSKINPYRMVIVARLAILALFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAIKVPTEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDVEGNELPRLVYVSREKRPGFQHHKKAGAMNSLIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRNDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRHALYGYEPPKGPKRPKMVSCDCCPCFGSRKKLKSSKSGIDGDAAVMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCIPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGYKGGNLKWLERFAYVNTTVYPFTSIPLLAYCSLPAICLLTDKFIMPPISTLASLYFISLFLSIIATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33014775 33019281 + Sed0006576.1 Sed12g2280 733236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2280 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Sed12g2280 1032 FunFam Cellulose synthase 19 110 - -
Sed12g2280 1032 SUPERFAMILY RING/U-box 21 109 - -
Sed12g2280 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Sed12g2280 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Sed12g2280 1032 MobiDBLite consensus disorder prediction 131 166 - -
Sed12g2280 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Sed12g2280 1032 FunFam Cellulose synthase 444 618 - -
Sed12g2280 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Sed12g2280 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 440 618 IPR029044 -
Sed12g2280 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1001 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Sed12g2280 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 849 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2036 Sed-Chr5:33598082 Sed12g2280 Sed-Chr12:33014775 4.40E-103 dispersed
Sed07g0655 Sed-Chr7:4913173 Sed12g2280 Sed-Chr12:33014775 0.00E+00 dispersed
Sed07g0656 Sed-Chr7:4913173 Sed12g2280 Sed-Chr12:33014775 0.00E+00 dispersed
Sed12g0395 Sed-Chr12:2378613 Sed12g2280 Sed-Chr12:33014775 1.20E-238 dispersed
Sed12g2280 Sed-Chr12:33014775 Sed14g0208 Sed-Chr14:2351148 0.00E+00 dispersed
Sed03g2541 Sed-Chr3:40094076 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
Sed07g0163 Sed-Chr7:1442541 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
Sed08g2211 Sed-Chr8:35890291 Sed12g2280 Sed-Chr12:33014775 0.00E+00 transposed
Sed12g2280 Sed-Chr12:33014775 Sed08g0569 Sed-Chr8:3856602 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2280 K10999 - csv:101214842 2052.71