Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2281 ATGCAGCAGGCTGATCGGACGGCTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTCCTCCAACCATTCGTCTTCATCATCATCTTCTTCTTCTACTTTTCCATTCGGTTCCTTTTCCTCTCATCTCCCTTCCTTTTCTTTGAATGCTGGGGATTCGCGGTTTGAGGGTCGCGAACGTGTTCGATATACCCGAGATCAGCTTTTGCAGATTCGAGAGGCTGTTGTGGAAGTTCCAGTCCCAGATGATGTACTAAAACTTAAACGGGATATTGAAGTTGAATTTTTTGGCGAGGAACAAAGTTGGAGTCGCGGAGAGAGCAATCAACCTAATCTGTCTCAGAGTCGCTATTCTGAGCCAGACAAACGTGACTGGCGTGGCCGTTCTGCCCAATTCTCTCCTATTGGAGAGGAGAAGTCCAGGGAAACAATTCGAGATAGAGATGTTGGTGGTCATTTTGACCCTAGACAGCAAGACACAAATCAATTGAATCGTCAAGACTCAAGCTCATCTTGGGCTCGGGCCACTTCTAACCAAGGGGGAGGACCTTCTGCTTTAATCAAAGCTGAGGTACCATGGTCAGCTAGGAGAGGAAATCTCTCCGAAAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGCTAACACCAGAAAAGTTTGATCTCCTTAAGGATCAGCTAATTGACTCCGGAATCACTTCTGCTGATATTTTGAAGGGTGTCATTTCACTGATTTTTGACAAGGCTGTTCTGGAGCCCACATTTTGCCCCATGTATGCTCAATTGTGTTCTAATCTGAATCAGAAGCTACCACAATTTCCCTCCGACGAACCTGGTGGAAGGGAAATTACTTTTAAACGAGCCCTCTTAAATATCTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGATCAAGAGAGCGAGCGTAGAGATAAAGAAAGACTGGTTAAACTTCGTACTCTTGGAAATATTCGGTTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCCGAAAAGATTGTCCACCACATTGTGCAGGAACTTTTAGGACCAGATAACAAAATCTGTCCTGCCGAAGAAAATGTCGAGGCCATCTGTCAATTCTTTATCACCATAGGTAAGCAGCTAGATGAGAACACGAAATCCCGTCATATAAATGAAACGTACTTCGGCCGATTGAAAGAATTGACTACACACTCTCAGTTGGCCCCACGACTGAAGTTCCTGGTTCGTGATGTTCTTGATTTGCGTGCTAACAAATGGGTTCCTAGGCGTGAAGAGGTTAAAGCCAAAACTATTACTGAAATACATTCAGAGGCAGAAAAAACTCTCGGACTACGTCCTGGTGCTACTGCCAATATCAGAAATAGTCGTGTTGTGTCTGGTTCTCCTGGGAACACCAGCCCTGTGGGCTTTCCTATTAATCGACCTGGTTTCGGGGGTATGATGCCTGGCATGCCAGGAACTAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGGCCGGACAAGGGGGGCAGATGGATCTGGTATTCGGCCTGCTGGGCGTGGCCAGACACCATTGGTTGGCAAAGCATCGGCGTCGAATGCAAGGCTACTACCCCAAGGAACTGGTGGGCTCATTAGTAATAAGATCAGTGGTCTTTTGCAGGGGGCAGGTGCAACTGCTACTCATCCTCTAAACGTCGGTCAGGGGCTGGAGCCCGCTGGTCAGTTTCAGAAACCAACTAGGGCAGCAACTGCCCTTCCACCTGCTGAGCGACCACAGGTTTCAACTGCAACTTTTAAACAAGATGATCTAAAAAAGAAAACTCTCTCTCTTCTGGAAGAATATTTCAGCATTCGGATTTTGGATGAAGCCCTACAGTGCGTGGAAGAACTCATGACACCGGCTTATCACCCAGAGGTTGTAAAAGAAGCCATTTCCCTAGCCCTAGAGAAAAGCCCACCCTGTGTAGATGCAGCAGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTCACAACTGGTGACATTGGGACTGGATGTTTGCTATATGCTTCTATTCTCGACGACACAGGCATCGATTTACCAAAAGCCGCAATAAGTTTTGGTGAGATTATTGGGAAACTTGTTATATCTGGCGGTTTGGATTTTCTGGTGGTGAAGGAGGCCCTTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACGATTAGTTCTCATGTGTCTGGGCAAGGATTACTGGATTCATTGGCATCCGATATCGAGGCCTGTCGAAGCCTAGCTTAG 2367 46.73 MQQADRTALSLRPGGGRPRLLGPRSSNHSSSSSSSSSTFPFGSFSSHLPSFSLNAGDSRFEGRERVRYTRDQLLQIREAVVEVPVPDDVLKLKRDIEVEFFGEEQSWSRGESNQPNLSQSRYSEPDKRDWRGRSAQFSPIGEEKSRETIRDRDVGGHFDPRQQDTNQLNRQDSSSSWARATSNQGGGPSALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKDQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSNLNQKLPQFPSDEPGGREITFKRALLNICQEAFEGADKLREEVRQMTAPDQESERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKICPAEENVEAICQFFITIGKQLDENTKSRHINETYFGRLKELTTHSQLAPRLKFLVRDVLDLRANKWVPRREEVKAKTITEIHSEAEKTLGLRPGATANIRNSRVVSGSPGNTSPVGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRGRTRGADGSGIRPAGRGQTPLVGKASASNARLLPQGTGGLISNKISGLLQGAGATATHPLNVGQGLEPAGQFQKPTRAATALPPAERPQVSTATFKQDDLKKKTLSLLEEYFSIRILDEALQCVEELMTPAYHPEVVKEAISLALEKSPPCVDAAVKFLDYLLSRKVFTTGDIGTGCLLYASILDDTGIDLPKAAISFGEIIGKLVISGGLDFLVVKEALKKVEDDRFRKDIFDAVLKTISSHVSGQGLLDSLASDIEACRSLA 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33023449 33029130 + Sed0025183.1 Sed12g2281 733237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2281 788 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 28 787 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Sed12g2281 788 ProSiteProfiles MI domain profile. 623 745 IPR003891 -
Sed12g2281 788 MobiDBLite consensus disorder prediction 106 121 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 472 487 - -
Sed12g2281 788 Gene3D - 203 438 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 160 188 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 527 546 - -
Sed12g2281 788 Pfam MA3 domain 624 736 IPR003891 -
Sed12g2281 788 Gene3D - 617 781 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 1 41 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 472 496 - -
Sed12g2281 788 Pfam MIF4G domain 212 437 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g2281 788 SMART if4_15 212 437 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g2281 788 FunFam Eukaryotic translation initiation factor isoform 4G-2 203 438 - -
Sed12g2281 788 SUPERFAMILY ARM repeat 205 440 IPR016024 -
Sed12g2281 788 MobiDBLite consensus disorder prediction 104 190 - -
Sed12g2281 788 MobiDBLite consensus disorder prediction 23 41 - -
Sed12g2281 788 SMART ma3_7 624 736 IPR003891 -
Sed12g2281 788 SUPERFAMILY ARM repeat 619 778 IPR016024 -
Sed12g2281 788 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1753 Sed-Chr5:31346957 Sed12g2281 Sed-Chr12:33023449 2.20E-245 dispersed
Sed09g0152 Sed-Chr9:1177059 Sed12g2281 Sed-Chr12:33023449 3.70E-52 dispersed
Sed12g2281 Sed-Chr12:33023449 Sed13g1954 Sed-Chr13:24441564 1.80E-242 dispersed
Sed12g2281 Sed-Chr12:33023449 Sed08g0571 Sed-Chr8:3867217 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2281 K03260 - csv:101207520 1244.18