Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2294 ATGTCGATGTTCCGCAAATTGTTCTTCCGGAAACCGCCCGATGGCCTTCTCGAGATCTGTGAAAATGTTTACGTTTTTGATTGCTGTTTTTCAACGGATGCTTGGAAGGTAGAGAATTATGAAGTTTACTTAGGTGGAATAGTGGCTCAACTCCGAGAACATTTAGCGGATGCATCGTTCTTGGTATTCAATTTTAGGAAATTAGAGATGCAAAGTCAGATGGGCGATATCCTATCCAAGTATGATATGACCATAATGGACTACCCTCAGAAATACGAGGGTTGCCCAATTTTAACATTGGAAGTGATTCACCATTTTCTAAGATCATGTGAAAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGTTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATCGGAAACAATATAGCGGGGAGCAAAGGACATTGGACATGGTTTATCGGCAGGCACCTCGGGAGTTTTTGCATTCTTTGTCTCCTATGAATCCAGTTCCTTCTCAATTAAGGTATCTACAATATGTCGCTAGGAGAAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGGGAGGGTGGTTGCTGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTTGTCAGCGACCGAACTCCTAAAGTTCTGTATTCAACTCCGAAAAGAAGCAAAAATGTCCATTCTTACAAACAGGCAGAATCAGAGCTAGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTTCTTGAGTGCATCTCCTTGCATGACAACATGGAATTTGAAGAGGTGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTTAACCGTGAAGAGATTGACACTTTGTGGAATGTTAAAGATAAGTTTCCAAAGGAATTTCGAGCAGAGATTCTTTTCTCTGAGATGGATTCTGGAACTAGTACTGTTGAAAATGATGTACTTTGCTTTGAAGAGGAAGGTCTCCCCATTGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAGGCAGATGTTGCACGCAGTGTGCTCCATCAAATGAATGCCTTAAACATAGCCCATGGGAGGTCGGATAATAATTCTCTTTGGAGTACGCAAGTTAGTCCTTTACTTCAGGGTACAAGTCCCAGAAAATTTCTGAAAATGAAGAAGTTTGCACTAGAGAACAAAACAAAAATGCTAGAGAAGGAAGATTTTAGTCCAACATCTAAATTTTCCTCGGATTCTGCTAAAACTGAACAAAACAATGAATTTGATTCAGTATTTCCGCATGATGTTTTGCATGAGTCGCCAATTTCAGAAAGAAGTGATAGGACTTCACACAGTGCTTCAGTTGGAAGTCCCTGGTTTCTTGATTTTGAAGGAGAAACTGAGGGTTCTCATCTGAAAATTGAATCCTCATCTTCTCCGCATGCAGCTTTGACTGTTTCTCTTGCCCCTGTATCTCTAACGACAAAAAGTTCCCTAACAGAAACAACAATCCCACAACCTCCTTCTCTCCCCCAACTTTCCACAACTACATCACCACTTCAGTCTATTGACTTTCCAGAGGATCAAAGTCAGTTATCAACTCCCTTTTCTATAACTCCTGCAATTTGTTCTCCTCCACCACCTTCGCCACCTTCGCCTTTTCCTTCAACATTAGCTTCCCATCCTACAACTGCATCCTTCGTGCCTCAACCGCCACCACCTCCTCCTCCTCCAACGCCCTTTACAGATCCTAAGATTTCCTCCGTTGTGCCTCCACCGCCGCCACCTCCTCCTTTGACGTCCAAACAGAGTGAAAGTAATTCAACATCTCCATTTGTTTCTCTCCCACCACCACCACCTTTTCCTATGACTTCCAGGCAGGTTGGAAGTACTTCAACATCTCCATCGGTTCCTCCTCCTCCACCACCGCCTGCTTCCACTAAGGGCTCCTCTCCACCCATTCCTTCTGCTCCCCCTCCTCCTAACCTTTCTGGGAGAGGGACTTCAAAATCTGGAGAACTGTTACCCGGTTCTCTTTGTAGACCTTCCCCTCCAGGACCACCGTGTATTTCTCCATCAAATGGAAAGGGACGAAGTTTGTCACGCACTTTAAATTCAAGAGTACATATAACTAAGAAATTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTTCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTACCAAGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTAATCAGCACAAGAAGTCAAGTGGACCTGGTTCTGTTGTGAATAAACCTGAGAAAGTGCAACTGGTTGATCACAGGCGAGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTTCCTTTGCCTGATTTAATGAATTCTGTACTTGACCTTGATGATTCAGCGATGGATATTGATCAGGTTGAGAATCTTCTTAAGTTTTGCCCGACAAAGGAGGAAATGGATTTACTCAAGGGCTACACAGGAGAAAGGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGTAGAATCTAAACTTCAAGTTTTCTCATTTAAGATACAGTTCAGCTCTCAGGTCACTGACCTCAAAAAAAGCCTGAACTTTGTTAACTCTGCAGCAGAAGAGATAAAAAGTTCAGTCAAGTTGAAGAGAATCATGCAGACCATTCTATCTCTTGGAAATGCTTTAAACCAGGGAACAGCCAGGGGTTCTGCTATAGGATTTAGGCTGGACAGCCTTCTTAAACTGACAGATACTCGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTCGCTGACAAACTGCCAGAAGTTCTGGATTTTTCTACAAATCTTGCAAACTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCTGAGGAGATGCAAGCAATCAGCAAAGGGTTGGAGAAAGTTGTTCAGGAATTGTCTACATCTGAAAATGATGGCCCTGTATCCAATAATTTCCGAACGGTTTTAAAAGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCGAGCGTGGGTAGAAATGTAGATTCTTTGATTCTCTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCATATTCAACTTTGTGAGAATGTTTAACCGAGCCCACGAGGAAAACTGCAAGCAAATAGAGCTTGAAATAAAGAAAGCAAATGAGAGCGAAAAATCAAAGACACCCTCACATAAGAAAACGAGAACGAGACAGTTATCGCACTCACAGATCGAGATTGGCAATGTCAAGTAA 3474 41.94 MSMFRKLFFRKPPDGLLEICENVYVFDCCFSTDAWKVENYEVYLGGIVAQLREHLADASFLVFNFRKLEMQSQMGDILSKYDMTIMDYPQKYEGCPILTLEVIHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPREFLHSLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCCPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVHSYKQAESELVKIDVNCHIQGDVVLECISLHDNMEFEEVMFRAMFNTAFIRSNILILNREEIDTLWNVKDKFPKEFRAEILFSEMDSGTSTVENDVLCFEEEGLPIEAFAKVQEIFSHVDWLDPKADVARSVLHQMNALNIAHGRSDNNSLWSTQVSPLLQGTSPRKFLKMKKFALENKTKMLEKEDFSPTSKFSSDSAKTEQNNEFDSVFPHDVLHESPISERSDRTSHSASVGSPWFLDFEGETEGSHLKIESSSSPHAALTVSLAPVSLTTKSSLTETTIPQPPSLPQLSTTTSPLQSIDFPEDQSQLSTPFSITPAICSPPPPSPPSPFPSTLASHPTTASFVPQPPPPPPPPTPFTDPKISSVVPPPPPPPPLTSKQSESNSTSPFVSLPPPPPFPMTSRQVGSTSTSPSVPPPPPPPASTKGSSPPIPSAPPPPNLSGRGTSKSGELLPGSLCRPSPPGPPCISPSNGKGRSLSRTLNSRVHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEATKAPEIDMSELESLFSAAVPAPNQHKKSSGPGSVVNKPEKVQLVDHRRAYNCEIMLSKVKVPLPDLMNSVLDLDDSAMDIDQVENLLKFCPTKEEMDLLKGYTGEREKLGKCEQFFLELMQVPRVESKLQVFSFKIQFSSQVTDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKILADKLPEVLDFSTNLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPVSNNFRTVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTIFNFVRMFNRAHEENCKQIELEIKKANESEKSKTPSHKKTRTRQLSHSQIEIGNVK 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33108590 33121545 + Sed0007572.1 Sed12g2294 733250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2294 1157 MobiDBLite consensus disorder prediction 530 571 - -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 445 461 - -
Sed12g2294 1157 ProSiteProfiles Formin homology-2 (FH2) domain profile. 736 1135 IPR015425 -
Sed12g2294 1157 PANTHER FORMIN-J 1 1133 IPR051144 -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 666 694 - -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 439 464 - -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 1127 1157 - -
Sed12g2294 1157 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 530 733 - -
Sed12g2294 1157 Pfam Formin Homology 2 Domain 743 1110 IPR015425 -
Sed12g2294 1157 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 572 589 - -
Sed12g2294 1157 Gene3D - 196 340 - -
Sed12g2294 1157 SMART it6_source 736 1155 IPR015425 -
Sed12g2294 1157 Coils Coil 1110 1130 - -
Sed12g2294 1157 MobiDBLite consensus disorder prediction 598 633 - -
Sed12g2294 1157 SUPERFAMILY Formin homology 2 domain (FH2 domain) 810 1128 - -
Sed12g2294 1157 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 186 IPR029021 -
Sed12g2294 1157 Gene3D Formin, FH2 domain 734 1120 IPR042201 -
Sed12g2294 1157 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
Sed12g2294 1157 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Sed12g2294 1157 SMART PTEN_C2_2 197 337 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2294 Sed-Chr12:33108590 Sed13g1968 Sed-Chr13:24532389 0.00E+00 dispersed
Sed12g2294 Sed-Chr12:33108590 Sed01g2329 Sed-Chr1:17594475 2.20E-244 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2294 K28090 - csv:101221713 1671.75