Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2295 ATGGCGGAAAAGGACCGAGACTGTCATTCTGGTGTTCTACATGGAAAATACGAACTAGGTCGGCTTCTAGGGCATGGAACCTTCGCGAAGGTTTACCATGCTCGGAATCTGCAGACGGAGACGAGCATGGCGATGAAGATCGTCGGAAAAGAGAAGGTCATAAAAGTAGGTATGATGGAGCAGGTTAAGAGAGAGATCTCTGTAATGAAGATGGTGAAGCATCCGAATATCGTCGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCGATGGAGCTTGTTCGAGGCGGAGAACTGTTCGCCAAAATTTCTCGAGGTCGATTGAGAGAGGATCTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGCCATAGTCGTGGTGTTTATCACCGAGATCTGAAACCGGAGAATCTTCTCCTCGATGAACACGGAAATCTTAAGGTTACTGATTTTGGACTGAGCGCATTTTCTGAGCATCTGAAACAGGACGGATTGTTGCATACAACTTGTGGTACGCCGGCGTACGTCGCGCCGGAGGTCATCGGGAAGAAGGGATACGACGGCGCTAAAGCCGACATATGGTCCTGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATTCCTCCCGTTTCAAGACGACAATATTGTGTCCATGTACAGGAAGATTTACAGAGGAGACTTCAAATGTCCTCCGTGGTTCTCATCCGAAGCTCGTCGGTTAGTCACGAAACTCCTCGATCCGAATCCGAGCACAAGAATCATTACATCCAAGATCATGGCGTCTTCCTGGTTCAGGAAATCAATTCCAAGAACTATAATAACTAAAGGAGAGCAAGAATTCGAGAAGCTGAAGCAATCAGAGACGCTGAATGCGTTTCATATAATCTCATTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGCTGAGATTTGCGACGACGGGGCCGGCAAGCAGTGTGATTTCGAAGCTGGAAGAGGTTGCGAAGGCGGGGAAGTTCAGCGTGAAGAAAAGCGAATCGAGGGTCAGATTGCAGGGCCACGAGTGTGGGAGAAAAGGGAAACTGGCGGTCGCGGCGGAGATCTTCGCTGTGACGCCTTCATTTCTCGTGGTGGAGGTGAAGAAAGATCACGGCGACACCTTAGAATACAATCAATTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATTTTCTGGACATCACCAACGGAGAACTCCATGCCAGTTTGA 1281 49.1 MAEKDRDCHSGVLHGKYELGRLLGHGTFAKVYHARNLQTETSMAMKIVGKEKVIKVGMMEQVKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFAKISRGRLREDLARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEHGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLVTKLLDPNPSTRIITSKIMASSWFRKSIPRTIITKGEQEFEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTGPASSVISKLEEVAKAGKFSVKKSESRVRLQGHECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIFWTSPTENSMPV 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33140273 33142196 + Sed0017955.1 Sed12g2295 733251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2295 426 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2295 426 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Sed12g2295 426 Pfam NAF domain 294 353 IPR004041 GO:0007165(InterPro)
Sed12g2295 426 CDD CIPK_C 297 412 - -
Sed12g2295 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 411 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed12g2295 426 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Sed12g2295 426 CDD STKc_SnRK3 16 270 - -
Sed12g2295 426 FunFam Non-specific serine/threonine protein kinase 291 416 - -
Sed12g2295 426 FunFam Non-specific serine/threonine protein kinase 7 297 - -
Sed12g2295 426 Gene3D Transferase(Phosphotransferase) domain 1 99 276 - -
Sed12g2295 426 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Sed12g2295 426 ProSiteProfiles NAF domain profile. 291 315 IPR018451 GO:0007165(InterPro)
Sed12g2295 426 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2295 426 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2295 426 Gene3D Kinase associated domain 1, KA1 291 417 - -
Sed12g2295 426 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Sed12g2295 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1362 Sed-Chr2:49918784 Sed12g2295 Sed-Chr12:33140273 1.60E-86 dispersed
Sed12g2295 Sed-Chr12:33140273 Sed14g0587 Sed-Chr14:5939868 1.50E-142 dispersed
Sed08g1571 Sed-Chr8:30794847 Sed12g2295 Sed-Chr12:33140273 5.00E-202 transposed
Sed12g2295 Sed-Chr12:33140273 Sed06g2051 Sed-Chr6:44599024 1.20E-131 wgd
Sed12g2295 Sed-Chr12:33140273 Sed08g0592 Sed-Chr8:4062597 3.80E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80041 PF00069 Pkinase 3.70E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2295 - - - 0.0