Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2296 ATGCAACAGGAGTGGCCAAGTACGATTTTGAAAACTAGGGTGAATACAATTGCGGAAGGTTCAGATTCAAGCTGCATCACTTGCCCATTTCCTGCAAAGGGATGCAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTTGTTCCTCAGCAGAATGGCCATTGGGGTGCTCAAATTTACGCCAATCACCAGCGCATTTGGCTTGGTACGTTCAAGTCGGAAAGCGAGGCAGCCATGGCTTACGATAGTGCAGCTATAAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAAATCACAATTGAAGAGCCAAGCTTTCAGAAACTATACACTACAGACGCTTTGCTAAACATGTTAAAGGAAGGTTCTTACACAACCAAATTTGCTGAGTATGTGAGGGATCACTCTGAAAGTGCACAAACATCAGCTGGTCTCTCAGCAGCAAAGATGAATAACAATGAAGGTACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACTCCGAGCGACGTCGGTAAGTTGAACAGATTGGTCATCCCAAAGAAATATGCTGTTAAATACTTCCCTCATATATCGGCTAGCACAATAGAAAATGTGGAACGCGCTAATGACGATCATGACGTGCAGCTAATATTTTTTGACAAAAGGATGAAACAATGGAAATTTCGCTATTGTTACTGGAAAAGTAGCCAAAGCTATGTATTTACGCGAGGTTGGAATCGATTTGTGAAGGAAAAACAACTGAAAGCTAGCGACATCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATGCAAAAACTACATTTTGTGTGGTGGATGTTAAAAACGGCAACGACAATGGTGCCGACTCAGTTGAGAACAGAATGCAGAGTAGTGTAATGCAGCTAGATTTGGCGGATGGAGAACTCGAAGAATTGGTGTCGCATAAACATATAGGTGATGAACTAAAAGATGATGCTGAAGTTAAGGGCTTCAAATTGTTTGGAGTGCATATTAAGTGA 1023 41.54 MQQEWPSTILKTRVNTIAEGSDSSCITCPFPAKGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSESEAAMAYDSAAIRIRSGDCHRNFPWTKITIEEPSFQKLYTTDALLNMLKEGSYTTKFAEYVRDHSESAQTSAGLSAAKMNNNEGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASTIENVERANDDHDVQLIFFDKRMKQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKASDIIAFYLCEAAKASDAKTTFCVVDVKNGNDNGADSVENRMQSSVMQLDLADGELEELVSHKHIGDELKDDAEVKGFKLFGVHIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33147931 33163573 - Sed0026709.1 Sed12g2296 733252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2296 340 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Sed12g2296 340 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2296 340 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Sed12g2296 340 Gene3D - 162 289 IPR015300 -
Sed12g2296 340 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Sed12g2296 340 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2296 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 338 IPR044800 GO:0003700(InterPro)
Sed12g2296 340 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Sed12g2296 340 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
Sed12g2296 340 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2296 340 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Sed12g2296 340 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Sed12g2296 340 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2058 Sed-Chr7:35877195 Sed12g2296 Sed-Chr12:33147931 4.00E-45 dispersed
Sed12g2296 Sed-Chr12:33147931 Sed13g0860 Sed-Chr13:6369344 5.10E-24 dispersed
Sed12g2296 Sed-Chr12:33147931 Sed12g2297 Sed-Chr12:33147931 3.10E-199 tandem
Sed12g2296 Sed-Chr12:33147931 Sed08g0593 Sed-Chr8:4070707 2.00E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40296 PF02362 B3 1.40E-24 CL0405 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2296 K09287 - csv:101212246 555.829