Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2300 ATGCAGCCGTGCAGCAGAGAAATGCAAACCCTCAACTCCCTCCTAAACAACTCCCAAATCTCCCTTCAAGACCTCCACGCCGACGACCACCACCACCTCAACCCGCCGCCGCATCTCCACCATTTCGACCCGGCCGCCGCCGCCGCCCCACACGACGATTTCCTCGAGCAAATGCTGAACACAATCCCACCCTGTTCCTGGCCGGACCCAAAATCCCCTTGGGACATGAACCCCATCAATAAACCCACCAGAGATATCTCCGACGACCAGATCGCAACCGCCTCTCCCGCCGCGAAGGCCGCCGTCATGTTCCAGCAACAGCTTCTCTTATCCAGAGGCATCTCCGCCGCCCCCGCCGCCGCCGATCATGGCCTCCCCCCTATGCCTCTCTCCCTCGGAAATGCTGACGTGGACCACCGGCCACCCATCTCGAACGGTTCGGTTCAGCCGCATAGTTTCGGAGCTCCGGCCGGTGGGTCCGCCGGAGTTTTGCCGTCTCAGCCGAAGCAGAAAGTCAGAGCTCGCAGAGGCCAAGCCACTGATCCTCACAGCATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCACTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAGGCTTCGATGCTGGATGAGATCATAGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTAAGCATGAGCAGGTTAGGAGGTGCAGGTGCTGTTGCTCCTCTTGTTGCTGACGTGTCCTCAGAGGGAGGCGGTGAGTGTATGCAAGGAAGTGGGGCCCAGGGTGGCCGGAGTTCAAACGGCGGCGGCGACGCCATGACGGTGACGGAGCAGCAGGTGGCGAAGCTGATGGAGAAGGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGTCTGTGCCTAATGCCCATCTCACTGGCCACGGCCATTTCCACCTCCACGTGTCACTCATCCAGGAATCCGATGATCAACGGCGGCGTCGGCGGCGGGATTCCGGTGATGGGTTCGAACGGAAAAGGGCCGCCGTCGTCGCCGAGCATGTCGGTGCTGACGGTGCAGTCGACGAGCATGGGGGCCGGCTCCGTCAAGGACGGCGCGTCGGTTTCGAAGCCGTGA 1137 59.37 MQPCSREMQTLNSLLNNSQISLQDLHADDHHHLNPPPHLHHFDPAAAAAPHDDFLEQMLNTIPPCSWPDPKSPWDMNPINKPTRDISDDQIATASPAAKAAVMFQQQLLLSRGISAAPAAADHGLPPMPLSLGNADVDHRPPISNGSVQPHSFGAPAGGSAGVLPSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAGAVAPLVADVSSEGGGECMQGSGAQGGRSSNGGGDAMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSSRNPMINGGVGGGIPVMGSNGKGPPSSPSMSVLTVQSTSMGAGSVKDGASVSKP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33179441 33184931 - Sed0012092.1 Sed12g2300 733256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2300 378 Gene3D - 172 235 IPR036638 GO:0046983(InterPro)
Sed12g2300 378 MobiDBLite consensus disorder prediction 174 188 - -
Sed12g2300 378 MobiDBLite consensus disorder prediction 343 378 - -
Sed12g2300 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983(InterPro)
Sed12g2300 378 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 316 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed12g2300 378 MobiDBLite consensus disorder prediction 133 188 - -
Sed12g2300 378 MobiDBLite consensus disorder prediction 346 369 - -
Sed12g2300 378 FunFam Transcription factor bHLH66 175 240 - -
Sed12g2300 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 237 IPR036638 GO:0046983(InterPro)
Sed12g2300 378 Pfam Helix-loop-helix DNA-binding domain 183 228 IPR011598 GO:0046983(InterPro)
Sed12g2300 378 SMART finulus 184 233 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1570 Sed-Chr8:30760877 Sed12g2300 Sed-Chr12:33179441 1.70E-73 dispersed
Sed12g2300 Sed-Chr12:33179441 Sed13g1799 Sed-Chr13:23005146 3.90E-17 dispersed
Sed14g1385 Sed-Chr14:22611683 Sed12g2300 Sed-Chr12:33179441 8.40E-10 dispersed
Sed14g1386 Sed-Chr14:22611683 Sed12g2300 Sed-Chr12:33179441 7.90E-08 dispersed
Sed09g1087 Sed-Chr9:34703580 Sed12g2300 Sed-Chr12:33179441 3.00E-47 transposed
Sed12g2300 Sed-Chr12:33179441 Sed03g2920 Sed-Chr3:46342887 1.60E-15 wgd
Sed12g2300 Sed-Chr12:33179441 Sed08g0596 Sed-Chr8:4098574 2.70E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40298 PF00010 HLH 1.40E-09 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2300 - - - 0.0