Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2304 ATGACTGTTGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGGCACTGATCGTTTTCCTATAGGGATGCGGGTTCTTGCTGTTGATGACAACCCTATTTGTCTCAAAGTTCTTGAGAATCTCCTCCGTAGATGCCAATATCATGTTACCACAACTATGCAGTCCGTTGAGGCTTTGAGGATGTTGAGAGAAAATAGAAACAATTTTGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCACATGGTGCGTGTGATTATCTGTTGAAACCGGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCGAAGGCGAAGAACAAGTTCCCTAGTCAAGATAAGGCTCGAAATGGAGGCAGTGAAGTTGAACAAGGTTTCTCGTCAGCCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAAGACCAAGATGATGACGAGGAGGAAGAAGGGAAAGAGAATGGGCTTGATAATGACGACTCCTCGAACCAGAAGAAGCCGAGGGTAGTGTGGTCCGTTGAGTTGCACAGGAAGTTCGTTTCAGCAGTTAATCAGCTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCATGGATCTGATGAATGTTGATGGACTTACCAGAGAAAATGTGGCAAGTCATTTACAGAAATATAGGCTTTATCTAAAGAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTCAAGATGGTGCATTCATGCGCACGAGTTCGCTCGATGGATATGGAAATTTACACGGCTTTGCAGGGCCGGGACGGATTCCAAATTCTTCATTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAACCTCCGTGGAATCACTTCTTCTGGTCTGAGTCAGCAAAACTCCCAAAATTTGAACTCTGCTATTAATATCCTTGGGAAGCTCCAACCAACTACTATGCTGCCTCCTAACCAATCTACGAATCTGTTGCAAGGAATACCGACTTCGCTCGAGCTCAGCCAGTTGCAACACAACAAGTCCACCATTCCTGTTGGAGACTTCAATATAATGAATGAGGCCTCTGGATTTGGAGTTTCCAACAGTTTCCCAGATAGTAGATTGAATATTGGAAATTCAACCAATTCGGTTTCCACTGCTTCATTGATGTTACAAGGAACCATGCCAACATATGGAAATCAGACTTCCTTTAGAATGGATCCGCTAAATGGAGAAACTTTTGACATAGATATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCTGCACACTTGTCTAGATTCTCAGTAACACCTTTGACCCCCAATGAAGCCTATCCCAATGATCAGTTCAGTGCAATAAACTCGAGTATTTCTTCTGCCCCCTCGACGATTGGGAACGTTTCGATTGATTTTGCCTCAAGAAGTGCAGTTTCAGCTCCCTTGCAAGATTCAAAAGATATGCAAGCAGGGGTAGTTGGCAGTGTCATTCAAGCTATGAATACCATGCCAAGGCAGAGTTGGGAAGAGCACAAACACGACTACAGTCGAAACGGGCAGCATAATCATGGTGCAATCAGTTCTCTGGCTTCTAACAATGGGACTCTAAACCCCTTAAACCAGGGTTTCAATCAGAATAGTCTAGTATATGATAGGAAGGTCAATTCATCTTTGAGAGCCCCATCAAATGCTGCTCCACTTTCCTTCTCTCAACATAGTGTTGTTGAAAAATTGGGTCCTAACATGAAGACAAATGCAGATAGAAACTACCTTTTGAATCAAACAAAGTCACACGATGGATCAATTCAAGGGAGTTTCGAGTCCTTGGATGATATGATGAATTCGATGATCAAACGGGAACAAAATGAAATACCAGAAATGAATGGAGAATTTGGATTTGAACATTACTCTCTAGGATCATGTATTTGA 2088 43.06 MTVEGHSVASVGDDGGTDRFPIGMRVLAVDDNPICLKVLENLLRRCQYHVTTTMQSVEALRMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKARNGGSEVEQGFSSASNADNAKFNRKRKDQDDDEEEEGKENGLDNDDSSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKIMDLMNVDGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSQDGAFMRTSSLDGYGNLHGFAGPGRIPNSSLSSYSPVGMLGRLNSPAGMNLRGITSSGLSQQNSQNLNSAINILGKLQPTTMLPPNQSTNLLQGIPTSLELSQLQHNKSTIPVGDFNIMNEASGFGVSNSFPDSRLNIGNSTNSVSTASLMLQGTMPTYGNQTSFRMDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAHLSRFSVTPLTPNEAYPNDQFSAINSSISSAPSTIGNVSIDFASRSAVSAPLQDSKDMQAGVVGSVIQAMNTMPRQSWEEHKHDYSRNGQHNHGAISSLASNNGTLNPLNQGFNQNSLVYDRKVNSSLRAPSNAAPLSFSQHSVVEKLGPNMKTNADRNYLLNQTKSHDGSIQGSFESLDDMMNSMIKREQNEIPEMNGEFGFEHYSLGSCI 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33214239 33218462 - Sed0021315.1 Sed12g2304 733260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2304 695 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Sed12g2304 695 Gene3D - 24 204 - -
Sed12g2304 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 312 IPR045279 GO:0009736(InterPro)
Sed12g2304 695 CDD REC_typeB_ARR-like 26 140 - -
Sed12g2304 695 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Sed12g2304 695 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Sed12g2304 695 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Sed12g2304 695 MobiDBLite consensus disorder prediction 157 178 - -
Sed12g2304 695 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Sed12g2304 695 FunFam Two-component response regulator 207 270 - -
Sed12g2304 695 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Sed12g2304 695 Gene3D - 207 270 - -
Sed12g2304 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Sed12g2304 695 SUPERFAMILY CheY-like 23 148 IPR011006 -
Sed12g2304 695 PIRSF RR_ARR_type-B 1 695 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed12g2304 695 MobiDBLite consensus disorder prediction 147 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0547 Sed-Chr7:4163554 Sed12g2304 Sed-Chr12:33214239 3.20E-10 dispersed
Sed07g0548 Sed-Chr7:4173020 Sed12g2304 Sed-Chr12:33214239 4.60E-10 dispersed
Sed11g0169 Sed-Chr11:1498704 Sed12g2304 Sed-Chr12:33214239 6.50E-112 dispersed
Sed12g0796 Sed-Chr12:4870388 Sed12g2304 Sed-Chr12:33214239 1.80E-61 dispersed
Sed12g0797 Sed-Chr12:4870388 Sed12g2304 Sed-Chr12:33214239 1.80E-61 dispersed
Sed12g2304 Sed-Chr12:33214239 Sed13g1979 Sed-Chr13:24680189 2.60E-128 dispersed
Sed12g2304 Sed-Chr12:33214239 Sed12g2305 Sed-Chr12:33214939 0.00E+00 tandem
Sed11g0167 Sed-Chr11:1498704 Sed12g2304 Sed-Chr12:33214239 3.70E-159 wgd
Sed12g2304 Sed-Chr12:33214239 Sed08g0600 Sed-Chr8:4143160 5.70E-256 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40299 PF00072 Response_reg 1.60E-25 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2304 K14491 - csv:101213687 1147.11