Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2305 ATGACTGTTGAGGGTCATTCCGTTGCTTCTGTCGGCGATGATGGCGGCACTGATCGTTTTCCTATAGGGATGCGGGTTCTTGCTGTTGATGACAACCCTATTTGTCTCAAAGTTCTTGAGAATCTCCTCCGTAGATGCCAATATCATGTTACCACAACTATGCAGTCCGTTGAGGCTTTGAGGATGTTGAGAGAAAATAGAAACAATTTTGATTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAGTTGGTGGGGCTTGAGATGGACCTACCTGTGATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTTCACATGGTGCGTGTGATTATCTGTTGAAACCGGTTCGAATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCGAAGGCGAAGAACAAGTTCCCTAGTCAAGATAAGGCTCGAAATGGAGGCAGTGAAGTTGAACAAGGTTTCTCGTCAGCCAGTAATGCAGACAATGCGAAATTCAATAGGAAGCGGAAAGACCAAGATGATGACGAGGAGGAAGAAGGGAAAGAGAATGGGCTTGATAATGACGACTCCTCGAACCAGAAGAAGCCGAGGGTAGTGTGGTCCGTTGAGTTGCACAGGAAGTTCGTTTCAGCAGTTAATCAGCTGGGTCTTGAAAAGGCTGTGCCGAAGAAAATCATGGATCTGATGAATGTTGATGGACTTACCAGAGAAAATGTGGCAAGTCATTTACAGAAATATAGGCTTTATCTAAAGAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTCAAGATGGTGCATTCATGCGCACGAGTTCGCTCGATGGATATGGAAATTTACACGGCTTTGCAGGGCCGGGACGGATTCCAAATTCTTCATTATCATCTTATTCACCTGTTGGAATGCTTGGAAGATTGAACTCCCCAGCTGGAATGAACCTCCGTGGAATCACTTCTTCTGGTCTGAGTCAGCAAAACTCCCAAAATTTGAACTCTGCTATTAATATCCTTGGGAAGCTCCAACCAACTACTATGCTGCCTCCTAACCAATCTACGAATCTGTTGCAAGGAATACCGACTTCGCTCGAGCTCAGCCAGTTGCAACACAACAAGTCCACCATTCCTGTTGGAGACTTCAATATAATGAATGAGGCCTCTGGATTTGGAGTTTCCAACAGTTTCCCAGATAGTAGATTGAATATTGGAAATTCAACCAATTCGGTTTCCACTGCTTCATTGATGTTACAAGGAACCATGCCAACATATGGAAATCAGACTTCCTTTAGAATGGATCCGCTAAATGGAGAAACTTTTGACATAGATATTGGTGGTTCAAATTTTTTGGATCCTGATCCTTCTAATGGAAACTGGCAGGGAGCTGCACACTTGTCTAGATTCTCAGTAACACCTTTGACCCCCAATGAAGCCTATCCCAATGATCAGTTCAGTGCAATAAACTCGAGTATTTCTTCTGCCCCCTCGACGATTGGGAACGTTTCGATTGATTTTGCCTCAAGAAGTGCAGTTTCAGCTCCCTTGCAAGATTCAAAAGATATGCAAGCAGGGGTAGTTGGCAGTGTCATTCAAGCTATGAATACCATGCCAAGGCAGAGTTGGGAAGAGCACAAACACGACTACAGTCGAAACGGGCAGCATAATCATGGTGCAATCAGTTCTCTGGCTTCTAACAATGGGACTCTAAACCCCTTAAACCAGGGTTTCAATCAGAATAGTCTAGTATATGATAGGAAGGTCAATTCATCTTTGAGAGCCCCATCAAATGCTGCTCCACTTTCCTTCTCTCAACATAGTGTTGTTGAAAAATTGGGTCCTAACATGAAGACAAATGCAGATAGAAACTACCTTTTGAATCAAACAAAGTCACACGATGGATCAATTCAAGGGAGTTTCGAGTCCTTGGATGATATGATGAATTCGATGATCAAACGGGTATAG 2022 43.47 MTVEGHSVASVGDDGGTDRFPIGMRVLAVDDNPICLKVLENLLRRCQYHVTTTMQSVEALRMLRENRNNFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGISHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKFPSQDKARNGGSEVEQGFSSASNADNAKFNRKRKDQDDDEEEEGKENGLDNDDSSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKIMDLMNVDGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSQDGAFMRTSSLDGYGNLHGFAGPGRIPNSSLSSYSPVGMLGRLNSPAGMNLRGITSSGLSQQNSQNLNSAINILGKLQPTTMLPPNQSTNLLQGIPTSLELSQLQHNKSTIPVGDFNIMNEASGFGVSNSFPDSRLNIGNSTNSVSTASLMLQGTMPTYGNQTSFRMDPLNGETFDIDIGGSNFLDPDPSNGNWQGAAHLSRFSVTPLTPNEAYPNDQFSAINSSISSAPSTIGNVSIDFASRSAVSAPLQDSKDMQAGVVGSVIQAMNTMPRQSWEEHKHDYSRNGQHNHGAISSLASNNGTLNPLNQGFNQNSLVYDRKVNSSLRAPSNAAPLSFSQHSVVEKLGPNMKTNADRNYLLNQTKSHDGSIQGSFESLDDMMNSMIKRV 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33214939 33218462 - Sed0021315.2 Sed12g2305 733261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2305 673 FunFam Two-component response regulator 207 270 - -
Sed12g2305 673 Gene3D - 207 270 - -
Sed12g2305 673 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Sed12g2305 673 PIRSF RR_ARR_type-B 1 672 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed12g2305 673 CDD REC_typeB_ARR-like 26 140 - -
Sed12g2305 673 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Sed12g2305 673 MobiDBLite consensus disorder prediction 157 178 - -
Sed12g2305 673 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Sed12g2305 673 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Sed12g2305 673 SUPERFAMILY CheY-like 23 148 IPR011006 -
Sed12g2305 673 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Sed12g2305 673 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
Sed12g2305 673 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Sed12g2305 673 Gene3D - 24 204 - -
Sed12g2305 673 MobiDBLite consensus disorder prediction 147 210 - -
Sed12g2305 673 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 327 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0600 Sed-Chr8:4143160 Sed12g2305 Sed-Chr12:33214939 1.50E-260 dispersed
Sed11g0170 Sed-Chr11:1498704 Sed12g2305 Sed-Chr12:33214939 1.10E-106 dispersed
Sed12g2305 Sed-Chr12:33214939 Sed13g1980 Sed-Chr13:24680189 1.60E-122 dispersed
Sed12g2304 Sed-Chr12:33214239 Sed12g2305 Sed-Chr12:33214939 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40300 PF00072 Response_reg 1.50E-25 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2305 K14491 - csv:101213687 1102.04