Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2309 | ATGGAGGACATATCATTGGAGGATGTTAAGAATGAGAATGTTGATCTAGAACGAATTCCTATCGAGGAAGTTTTTGAGCAACTAAAATGCACAAAAGAAGGATTGAGAACATCAGAAGGAGAAAAAAGGCTTCAAATTTTTGGTCCTAACAAGCTTGAAGAGAAGAAAGAGAGCAAGATTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTTTCATGGGTTATGGAATCTGCTGCAATCATGGCCATTGTTTTAGCCAATGGAGGGGGGAAACCACCAGATTGGCAAGATTTTCTTGGTATCATGGTTTTGTTGATCATCAATTCTACCATCAGTTTCATTGAAGAAAACAATGCTGGCAATGCAGCTGCTGCTCTGATGGCTGGTCTCGCCCCGAAAACCAAGGTTCTAAGAGATGGAAAGTGGAATGAAGCGGAGGCATCGATTCTGGTTCCAGGAGATGTGATTAGTGTCAAATTGGGTGATATTATCCCAGCCGATGCGCGTCTCTTGGAAGGCGATCCTCTTAAGATTGATCAATCTGCTCTTACCGGTGAATCTTTGCCTGTGACCAAGAATCCTGGGGATGAAGTGTTTTCGGGCTCGACTTGTAAGCAAGGTGAGATTGAAGCTGTTGTTATTGCCACTGGTGTGCATACTTTCTTTGGAAAGGCAGCTCATCTTGTGGATAGCACCAACCAAGTTGGTCATTTTCAAAAGGTGTTGACAGCCATTGGAAACTTCTGTATATGCTCGATTGCGGTCGGGATGGCCATTGAGATCGTAGTGATGTATCCAATCCAGAATAGGCCATATAGAGAAGGAATTGATAACTTGTTGGTGCTTCTCATTGGAGGTATTCCCATTGCTATGCCAACCGTTCTGTCGGTAACCATGGCTATTGGATCACATCGCCTTTCGCAACAAGGTGCGATTACGAAGAGGATGACAGCAATTGAAGAAATGGCTGGGATGGATGTTTTGTGCAGTGACAAGACAGGAACTCTCACCCTCAACAAGCTCACAGTGGACAAGTCCTTGATTGAGGTGTTTGTACCGGGCATGAACAAGGACGATGTTATGTTATATGCTGCAAGAGCTTCTAGAGTTGAAAATCAAGATGCCATTGATGCTTGCATTGTTGGAATGTTAGGTGACCCCAAAGAGGCAAGGGCAGGAATAACTGAGGTACATTTCTTGCCTTTCAACCCGGTCGAGAAGCGTACCGCCATTACCTATATTGACAAAGACAATAACTGGCATAGAAGCAGCAAAGGTGCTCCTGAACAGATAATTGACCTTTGTGAGCTTAAAGGAGAAATAAGAAAGAATGCTCATGCCATTATTGATAACTATGCTAATCGCGGTCTACGTTCTTTGGCGGTTGGTCGACAGACTGTTAAAGATAAGACCAAAGAAAGTGTTGGAGAACCATGGGAATTTGTTGGTCTCTTACCTTTATTTGATCCTCCAAGACATGATAGTGCAGAGACCATTCGTCGAGCTCTTGAACTTGGTGTTAATGTTAAGATGATCACTGGCGACCAACTCGCAATAGGAATAGAAACTGGTCGAAGGCTCGGAATGGGAACTAACATGTATCCGTCGTCGTCTTTGCTCGGTCAATGCAAGGATGAGTCAATGGCTTCCATTCCTGTGGATGAACTCATTGAGAAGGCTGATGGGTTTGCTGGTGTCTTCCCTGAACACAAGTATGAGATTGTTAAGAGACTTCAAGAGAGGAAGCATATTTGTGGCATGACAGGAGATGGTGTCAATGATGCTCCTGCTCTCAAGAAAGCCGACATCGGTATTGCGGTGGCCGATGCAACCGATGCAGCGAGAAGCGCATCCGACATTGTCTTGACAGAGCCAGGGCTCAGTGTGATTGTGAGTGCTGTATTAACCAGTAGGGCAATCTTTCAGAGAATGAAGAATTACACCATTTATGCAGTTTCCATCACAATCCGAATTGTTTTGGGATTCATGCTCGTTGCTCTCATTTGGAAGTTCGATTTTTCGCCTTTTATGGTCTTGATCATTGCCATCCTTAATGATGGAACCATCATGACCATTTCAAAGGACAGGGTCAAGCCATCACCTATGCCAGACTCGTGGAAGCTCAAAGAAATCTTTGCTACTGGTGTTGTCCTTGGAACATACATGTCCTTCATGACCGCGGTTTTCTTTTGGCTCGCCAAAGAAACGACCTTCTTTGAGAACACATTTAGTGTAAAGCCAATCCAAGATCTTGCTGAGATGAACTCTGCACTCTATCTACAAGTGAGCATCATTAGTCAAGCTCTCATCTTTGTCACCCGGTCAAGAAGTTGGTCCTTCGTCGAATGCCCCGGTTTCTTGCTACTTATTGCATTCTTTGCAGCACAATGGGTTGCTACTTTAATTGCTGTATATGCACAATGGAACTTTGCAAGGATTAGTGGCATTGGGTGGAAATGGGCAGGAGCTATCTGGGTGTTTAGTATTGTTACTTACTTCCCTCTTGATGTTCTCAAATTCATAATTCGTTTCGCCCTCAGCGGCAAGGCTTGGGACAACATGCTCGAGAATAAGACGGCATTTACTACCAAGAAGGACTACGGAAAAGGCAAAAGAGAGGCACAATGGGCAACTGCACAACGGACCTTGCATGGCCTGCAGCCACCCGAAACGATGTTCCACGAGAAGAGCAGCTACGAGGAACTTTCAGAGATTGCAGAGCAAGCCAAGAAAAGAGCTGAAGTTGCAAGGCTAAGAGAACTTCACACTTTAAAGGGCCATGTGGAGTCAGTAGTGAAGTTGAAGGGGCTTGACATTGACACTATCCAACAATTCTACACTGTTTAA | 2847 | 44.4 | MEDISLEDVKNENVDLERIPIEEVFEQLKCTKEGLRTSEGEKRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFLGIMVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWNEAEASILVPGDVISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMAIEIVVMYPIQNRPYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFVPGMNKDDVMLYAARASRVENQDAIDACIVGMLGDPKEARAGITEVHFLPFNPVEKRTAITYIDKDNNWHRSSKGAPEQIIDLCELKGEIRKNAHAIIDNYANRGLRSLAVGRQTVKDKTKESVGEPWEFVGLLPLFDPPRHDSAETIRRALELGVNVKMITGDQLAIGIETGRRLGMGTNMYPSSSLLGQCKDESMASIPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGTYMSFMTAVFFWLAKETTFFENTFSVKPIQDLAEMNSALYLQVSIISQALIFVTRSRSWSFVECPGFLLLIAFFAAQWVATLIAVYAQWNFARISGIGWKWAGAIWVFSIVTYFPLDVLKFIIRFALSGKAWDNMLENKTAFTTKKDYGKGKREAQWATAQRTLHGLQPPETMFHEKSSYEELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQFYTV | 948 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 33241248 | 33246253 | + | Sed0017595.1 | Sed12g2309 | 733265 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2309 | 948 | Coils | Coil | 899 | 919 | - | - | |
| Sed12g2309 | 948 | SUPERFAMILY | HAD-like | 325 | 635 | IPR036412 | - | |
| Sed12g2309 | 948 | SUPERFAMILY | Calcium ATPase, transduction domain A | 132 | 229 | IPR008250 | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 179 | 193 | - | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 505 | 515 | - | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 588 | 607 | - | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 494 | - | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 611 | 623 | - | - | |
| Sed12g2309 | 948 | PRINTS | P-type cation-transporting ATPase superfamily signature | 329 | 343 | - | - | |
| Sed12g2309 | 948 | SFLD | C1.7: P-type atpase like | 311 | 640 | - | - | |
| Sed12g2309 | 948 | CDD | P-type_ATPase_H | 34 | 840 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed12g2309 | 948 | FunFam | Plasma membrane ATPase | 132 | 216 | - | - | |
| Sed12g2309 | 948 | Gene3D | - | 326 | 625 | IPR023214 | - | |
| Sed12g2309 | 948 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 14 | 846 | IPR023298 | - | |
| Sed12g2309 | 948 | SFLD | p-type atpase | 311 | 640 | IPR044492 | - | |
| Sed12g2309 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 445 | 463 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 560 | 576 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 588 | 604 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 619 | 644 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | PRINTS | H+-transporting ATPase (proton pump) signature | 759 | 780 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | Gene3D | - | 94 | 814 | - | - | |
| Sed12g2309 | 948 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 34 | 805 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed12g2309 | 948 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 17 | 874 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed12g2309 | 948 | FunFam | Plasma membrane ATPase | 341 | 488 | - | - | |
| Sed12g2309 | 948 | Pfam | Cation transporter/ATPase, N-terminus | 18 | 81 | IPR004014 | - | |
| Sed12g2309 | 948 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 331 | 337 | IPR018303 | - | |
| Sed12g2309 | 948 | FunFam | Plasma membrane ATPase | 481 | 636 | - | - | |
| Sed12g2309 | 948 | SMART | Cation_ATPase_N_a_2 | 15 | 87 | IPR004014 | - | |
| Sed12g2309 | 948 | Pfam | E1-E2 ATPase | 131 | 308 | - | - | |
| Sed12g2309 | 948 | Gene3D | - | 341 | 488 | IPR023299 | GO:0000166(InterPro) | |
| Sed12g2309 | 948 | Gene3D | - | 897 | 948 | - | - | |
| Sed12g2309 | 948 | FunFam | ATPase 4 plasma membrane-type | 572 | 814 | - | - | |
| Sed12g2309 | 948 | Pfam | haloacid dehalogenase-like hydrolase | 325 | 602 | - | - | |
| Sed12g2309 | 948 | NCBIfam | HAD-IC family P-type ATPase | 563 | 675 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | NCBIfam | HAD-IC family P-type ATPase | 101 | 348 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed12g2309 | 948 | Gene3D | - | 132 | 216 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed11g0557 | Sed-Chr11:5847127 | Sed12g2309 | Sed-Chr12:33241248 | 0.00E+00 | dispersed | |
| Sed11g1984 | Sed-Chr11:34039862 | Sed12g2309 | Sed-Chr12:33241248 | 0.00E+00 | dispersed | |
| Sed12g2309 | Sed-Chr12:33241248 | Sed13g1363 | Sed-Chr13:19121131 | 9.70E-57 | dispersed | |
| Sed12g2309 | Sed-Chr12:33241248 | Sed05g1412 | Sed-Chr5:27526095 | 0.00E+00 | wgd | |
| Sed12g2309 | Sed-Chr12:33241248 | Sed06g2070 | Sed-Chr6:44709744 | 0.00E+00 | wgd | |
| Sed12g2309 | Sed-Chr12:33241248 | Sed08g0606 | Sed-Chr8:4183040 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2309 | K01535 | - | csv:101214655 | 1716.44 |