Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2317 ATGGCGTTTGACCAGAACTCGATTCCCACGGGCTTGCGGCCTTTAAATGTCGCTAGAACTTTAGTTGAAGATTCTCGGGTAATGCCGGTTGCTACTACTACGATTATGTCGAATCATTCCCGTGACGTTGCTAGTGCGGATTCTATGCCGGTTCCTTATAAGGGGAATGTCTCTGATATGGGATTTGTTGGCTTGGGGTATGGTAATGTGGTTACTGGTTTTGCTCCGTGGTGCCCTCGAATGCCTCCTCCTCCTCTTGTGCGTCCTGCCACGGTTCCTGCTGTTGGGCTTGGTTGCGGCTCGAACCTGAATGTCAGGGGCAATTACGGTGGTGCTAATGCTGTTGAGCTTGCTAGCAGTCGCATGGAAGTTGGGGTTAATCAGAATCCGATTTTGAGTCATCGAGTTGGGGGAGGTGGTGTAGAGTTTGTGAGCAATAATATCTCAATGGGGTTGGGGGATAGTACCAATTTATGTAATAATGTAAAGGCCGATGGTGATCAGATAAGTAGTGATAGTACTTCCGCATTTAGCGACCGTCTGGGAAATTCGGTTGGTGCGAATGTGTCTGATCGAGTGAGCCAGGAGAGTGGAGATGGTTCCATTCTGATTAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGGCCTAGTGATGGTATGTTGAGATATGTTGGGGGCCAGACCAGGATTATTAGTGTTAAAAGAGATGTGACTTTCAATGAGCTTGAGCGAAAGATGGTTGATACATGTGGGCAGGCTGTGGTTATTAAGTATCAGCTACCCGATGAGGATCTTGATGCCTTAGTGTCGGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTACGAGAAGTTAGTTGATAGGTCTTCAGATAGATCGGCTAAATTGAGGATGTTTTTGTTCTCTTCTTCAGAACTTGACACTTCAGGTATGGTGCAATTCGGAAATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGAGACATATGATAGCACTGGTGGTGGTATTACAAGAAAAGAGAACTTTGCAAGTACTACCTCAACTCAGAATTCTGACTTAAGTGGGGCTGAGGCAATTGATATCTCAAATAACAATCTAGGGGTTATGAGTGGGCCTCTATCCACAACATTGTCCTCACCTGGAGGAAATTCAGGTATTTCAGTTGCTATTGGTCCTGGATCAATGAAGGTAGATCCCGTTTCTGCAGTTTTTGTAGATGCCTCTGTCCTTCCATCAAGTATTCCTGTGGTTAACTCTGTTTCTCCTGAAGCTTCTTTCCAGCCAGATGCTGAGTTAGGAAGGTCTGCGCCTGTTACTCTAATGCAACAACAACCAGGTATTGACTTTCCTTTACCTTTGTCTCAATTGCAGCCTACTGTTGATCCTCGTCAAGCAGCATGTATGGACTATATACAACGTCCACAACCAGGTTTTTTAAATCCTCATCATTTAGGGGCATCTGGGTCTATGTTTATGCAACGACCAACTACTCTTGGAACCACCTCTCATCAGTTTGTCCCAGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCCCAATATTATGCCAAATACCTACCAATCATTGGTGCAGTATCCACAATCCCAGATGGAATATCTTGTGAACGAGAGCACATTTGGTCCAAGGTTTGTCCAGGTATCTTCAGAACAAGGCTACAACTCACACCAGGTTCCAGCTCCTCCGGTGTCAGTTGGAGGTTTAAATCAGGATCAAAGAGAAAATTTTACAAGCCCTGTATTTGATTCAAATTTTTTGTATTATAGTCATCGCCCTGAAGATCATTCAACAGTCCAGCTCCAGCCAATTAAAAATATTGCAGAAACTGGAGCTTTGAGGCAACAATCTACCGATCAAGGTGTTGGAATGCAAGCCAGGATCTTTAATCCTATGGATCCACAAGTTGGAAAACCTTCAGTGGAGGCAATTGGCTTCTCACATCATATTGAGGGTCAGCATGTGAATGAAAGCACTCTTAAAGATCAATGTACTATTGATCATAGTAGGATCTCGGCTCTACAGGATGTTCTTGGGAGGCAAGGTGATATTCAGTCACCTCATGTTGCTGTTGTAGAACAGATTTCAAAGTCTAGTCAAGTTGATACTCTCCAGCAGCATCATGCAGCTGTAGATAATCAGATCCCTTCTAGTTTAGGTGTGGATAAGCATGATTTTCGGTTTGGAGGTTCTCCTATACTGGCTTCAGAGTACAACATTCATGAAAATCCAAAAAAGTCCAGTGATAGTCACCATAGCATTATTCCAGATCAAAATGCTACTAACACTGGAATTTTGTATGACCATATTAGACCAATTGTTGGAGGTCTGGAAACTCTAAGTATATGCCCAACGGATATTTGTGCTAATTTCAATCACTGCAAACCACCTATTGAAAGAACTAGGAAGGAGGACAATTTTGACAGCTGTTTGCAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAGTTTTATAAAGCGAAAAGTGGTTCTCGACACAAATCACATGAAACCGACTACTTCTGCTTGTTCTTCATCTGAGGTTCCCTATTTGTTCAATGAACGACCTGTTGAGTTCAGTCAAGTGGGACAACTTCCAGTCATGGGCTCTTCCGGAATGTTACTGCAGTCAGAAAATCAAGTACAACATTTAGAATCCAATGAAGTTTCCCATAGCAGAAATCCACAGTTATTTGACATGAAGACCGAACATATTTATAATAAAGTTCCAGTTTCTGATGAGTGGAAGGAGGACACTTCTATATTCGAATCGAGGATGGTATCTGGGGATGTTGAATCTGCATCTTCACCTATTAGGTCTGGAAATGTACAGGAGGCTGTGAATTCACTATGCAGCCATCGGGATCCTGTGAATTCACTCTTTAGCAATCAGGATCCTTGGAACTTACAGCATGATGGCCATTTTTTGCCTCCTAGACCAAATAAAATCCAACCAGGGAATGAAGCCATAGCGACCAGGGAACCCTTGACAGAGAGCCCTTTCAAGAATATCGGTGAAGTAAATACGGAAACACTTTTGGATGATGGAGTATGTCATCCTCAGGTTAACTCACACAAAGTAGGCTCTTCGGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAATCAGAACAGTCCTCCAACTCTGACTTACATGAGAGAAGTGATTCATGCGAGACTGCTGAAGGAGATGTTCAGAATAATAACGATGTCAGGTCAAAACTTTCAGAAAAGGCGAATCTTGGTTTTCCAATGTTAGATGGATTTGGCCATCTGCAGGTGATAAAGAACAGCGACCTTGAAGAACTAAGAGAGTTAGGTTCTGGCACCTTTGGCACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATAAAGCTTGCTGATTTGCACCACCCAAATGTAGTTGCATTTTATGGTGTTGTGCTTGATGGTCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTCAATGGCTCGCTCAGAAATGCTTTGCTAAAGAATGAAAAGAGTCTTGACAAGCGGAAGCTCCTCTTGATTGCTATGGATGTGTCTTTTGGAATGGAATACCTGCACAGTAGGAGTATTGTGCACTTTGACTTAAAAAGTGATAATCTGCTCGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGCTGATTTGGGCCTATCCAAGGTGAAACGTCAGACATTTATATCAGGTGGTGTGCGAGGAACACTTCCATGGATAGCACCCGAGCTTTTGAATGGGAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTGTTGTCTTGTGGGAGCTCCTTACTGGTGAAGAACCTTATGCAAATTTGCATTATGGGGCTATCATAGGTGGCATAGTAAGCAACACATTGCGACCGGAAGTACCGGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACAAGAATTGCGCTCCATGTCTGCAAAGGTTCCTCAGAAAGTATCCAATCAACCACAGTAA 4215 43.39 MAFDQNSIPTGLRPLNVARTLVEDSRVMPVATTTIMSNHSRDVASADSMPVPYKGNVSDMGFVGLGYGNVVTGFAPWCPRMPPPPLVRPATVPAVGLGCGSNLNVRGNYGGANAVELASSRMEVGVNQNPILSHRVGGGGVEFVSNNISMGLGDSTNLCNNVKADGDQISSDSTSAFSDRLGNSVGANVSDRVSQESGDGSILIKKVKFMCSFGGKIFPRPSDGMLRYVGGQTRIISVKRDVTFNELERKMVDTCGQAVVIKYQLPDEDLDALVSVSCPDDLDNMMDEYEKLVDRSSDRSAKLRMFLFSSSELDTSGMVQFGNLHDSGQRYVETVNETYDSTGGGITRKENFASTTSTQNSDLSGAEAIDISNNNLGVMSGPLSTTLSSPGGNSGISVAIGPGSMKVDPVSAVFVDASVLPSSIPVVNSVSPEASFQPDAELGRSAPVTLMQQQPGIDFPLPLSQLQPTVDPRQAACMDYIQRPQPGFLNPHHLGASGSMFMQRPTTLGTTSHQFVPAVHMTMAPSSSHPNIMPNTYQSLVQYPQSQMEYLVNESTFGPRFVQVSSEQGYNSHQVPAPPVSVGGLNQDQRENFTSPVFDSNFLYYSHRPEDHSTVQLQPIKNIAETGALRQQSTDQGVGMQARIFNPMDPQVGKPSVEAIGFSHHIEGQHVNESTLKDQCTIDHSRISALQDVLGRQGDIQSPHVAVVEQISKSSQVDTLQQHHAAVDNQIPSSLGVDKHDFRFGGSPILASEYNIHENPKKSSDSHHSIIPDQNATNTGILYDHIRPIVGGLETLSICPTDICANFNHCKPPIERTRKEDNFDSCLQPVSEREVLLDNSFIKRKVVLDTNHMKPTTSACSSSEVPYLFNERPVEFSQVGQLPVMGSSGMLLQSENQVQHLESNEVSHSRNPQLFDMKTEHIYNKVPVSDEWKEDTSIFESRMVSGDVESASSPIRSGNVQEAVNSLCSHRDPVNSLFSNQDPWNLQHDGHFLPPRPNKIQPGNEAIATREPLTESPFKNIGEVNTETLLDDGVCHPQVNSHKVGSSEEQIRKDLQAVAEGVAASVLQSEQSSNSDLHERSDSCETAEGDVQNNNDVRSKLSEKANLGFPMLDGFGHLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKLLLIAMDVSFGMEYLHSRSIVHFDLKSDNLLVNLRDPHRPICKVADLGLSKVKRQTFISGGVRGTLPWIAPELLNGSNMVSEKVDVFSFGVVLWELLTGEEPYANLHYGAIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAQELRSMSAKVPQKVSNQPQ 1404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33269593 33276162 - Sed0011317.3 Sed12g2317 733273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2317 1404 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1119 1213 - -
Sed12g2317 1404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1251 1263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 SUPERFAMILY Protein kinase-like (PK-like) 1118 1387 IPR011009 -
Sed12g2317 1404 ProSiteProfiles Protein kinase domain profile. 1126 1391 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 Pfam PB1 domain 226 309 IPR000270 GO:0005515(InterPro)
Sed12g2317 1404 Gene3D Phosphorylase Kinase; domain 1 1119 1213 - -
Sed12g2317 1404 PRINTS Tyrosine kinase catalytic domain signature 1208 1221 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 PRINTS Tyrosine kinase catalytic domain signature 1359 1381 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 PRINTS Tyrosine kinase catalytic domain signature 1315 1337 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 PRINTS Tyrosine kinase catalytic domain signature 1245 1263 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 Gene3D - 227 310 - -
Sed12g2317 1404 SUPERFAMILY CAD & PB1 domains 222 315 - -
Sed12g2317 1404 MobiDBLite consensus disorder prediction 1067 1095 - -
Sed12g2317 1404 SMART PB1_new 221 310 IPR000270 GO:0005515(InterPro)
Sed12g2317 1404 CDD PB1_UP2 210 308 - -
Sed12g2317 1404 Gene3D Transferase(Phosphotransferase) domain 1 1214 1404 - -
Sed12g2317 1404 SMART serkin_6 1126 1391 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2317 1404 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 226 310 - -
Sed12g2317 1404 ProSitePatterns Protein kinases ATP-binding region signature. 1132 1163 IPR017441 GO:0005524(InterPro)
Sed12g2317 1404 PANTHER SERINE-THREONINE PROTEIN KINASE 165 1392 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed12g2317 1404 CDD STKc_MAP3K-like 1132 1388 - -
Sed12g2317 1404 Pfam Protein tyrosine and serine/threonine kinase 1128 1388 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2315 Sed-Chr12:33269593 Sed12g2317 Sed-Chr12:33269593 0.00E+00 dispersed
Sed12g2317 Sed-Chr12:33269593 Sed12g2319 Sed-Chr12:33269593 0.00E+00 dispersed
Sed12g2316 Sed-Chr12:33269593 Sed12g2317 Sed-Chr12:33269593 0.00E+00 tandem
Sed12g2317 Sed-Chr12:33269593 Sed12g2318 Sed-Chr12:33269593 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80044 PF07714 PK_Tyr_Ser-Thr 3.40E-60 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2317 - - - 0.0