Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2318 ATGGCGTTTGACCAGAACTCGATTCCCACGGGCTTGCGGCCTTTAAATGTCGCTAGAACTTTAGTTGAAGATTCTCGGGTAATGCCGGTTGCTACTACTACGATTATGTCGAATCATTCCCGTGACGTTGCTAGTGCGGATTCTATGCCGGTTCCTTATAAGGGGAATGTCTCTGATATGGGATTTGTTGGCTTGGGGTATGGTAATGTGGTTACTGGTTTTGCTCCGTGGTGCCCTCGAATGCCTCCTCCTCCTCTTGTGCGTCCTGCCACGGTTCCTGCTGTTGGGCTTGGTTGCGGCTCGAACCTGAATGTCAGGGGCAATTACGGTGGTGCTAATGCTGTTGAGCTTGCTAGCAGTCGCATGGAAGTTGGGGTTAATCAGAATCCGATTTTGAGTCATCGAGTTGGGGGAGGTGGTGTAGAGTTTGTGAGCAATAATATCTCAATGGGGTTGGGGGATAGTACCAATTTATGTAATAATGTAAAGGCCGATGGTGATCAGATAAGTAGTGATAGTACTTCCGCATTTAGCGACCGTCTGGGAAATTCGGTTGGTGCGAATGTGTCTGATCGAGTGAGCCAGGAGAGTGGAGATGGTTCCATTCTGATTAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGGCCTAGTGATGGTATGTTGAGATATGTTGGGGGCCAGACCAGGATTATTAGTGTTAAAAGAGATGTGACTTTCAATGAGCTTGAGCGAAAGATGGTTGATACATGTGGGCAGGCTGTGGTTATTAAGTATCAGCTACCCGATGAGGATCTTGATGCCTTAGTGTCGGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTACGAGAAGTTAGTTGATAGGTCTTCAGATAGATCGGCTAAATTGAGGATGTTTTTGTTCTCTTCTTCAGAACTTGACACTTCAGGTATGGTGCAATTCGGAAATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGAGACATATGATAGCACTGGTGGTGGTATTACAAGAAAAGAGAACTTTGCAAGTACTACCTCAACTCAGAATTCTGACTTAAGTGGGGCTGAGGCAATTGATATCTCAAATAACAATCTAGGGGTTATGAGTGGGCCTCTATCCACAACATTGTCCTCACCTGGAGGAAATTCAGGTATTTCAGTTGCTATTGGTCCTGGATCAATGAAGGTAGATCCCGTTTCTGCAGTTTTTGTAGATGCCTCTGTCCTTCCATCAAGTATTCCTGTGGTTAACTCTGTTTCTCCTGAAGCTTCTTTCCAGCCAGATGCTGAGTTAGGAAGGTCTGCGCCTGTTACTCTAATGCAACAACAACCAGGTATTGACTTTCCTTTACCTTTGTCTCAATTGCAGCCTACTGTTGATCCTCGTCAAGCAGCATGTATGGACTATATACAACGTCCACAACCAGGTTTTTTAAATCCTCATCATTTAGGGGCATCTGGGTCTATGTTTATGCAACGACCAACTACTCTTGGAACCACCTCTCATCAGTTTGTCCCAGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCCCAATATTATGCCAAATACCTACCAATCATTGGTGCAGTATCCACAATCCCAGATGGAATATCTTGTGAACGAGAGCACATTTGGTCCAAGGTTTGTCCAGGTATCTTCAGAACAAGGCTACAACTCACACCAGGTTCCAGCTCCTCCGGTGTCAGTTGGAGGTTTAAATCAGGTACCCCGGTCTGATCAGACTGTTACATCTGATGAATTGATATCCTATCGTCAGGATCAAAGAGAAAATTTTACAAGCCCTGTATTTGATTCAAATTTTTTGTATTATAGTCATCGCCCTGAAGATCATTCAACAGTCCAGCTCCAGCCAATTAAAAATATTGCAGAAACTGGAGCTTTGAGGCAACAATCTACCGATCAAGGTGTTGGAATGCAAGCCAGGATCTTTAATCCTATGGATCCACAAGTTGGAAAACCTTCAGTGGAGGCAATTGGCTTCTCACATCATATTGAGGGTCAGCATGTGAATGAAAGCACTCTTAAAGATCAATGTACTATTGATCATAGTAGGATCTCGGCTCTACAGGATGTTCTTGGGAGGCAAGGTGATATTCAGTCACCTCATGTTGCTGTTGTAGAACAGATTTCAAAGTCTAGTCAAGTTGATACTCTCCAGCAGCATCATGCAGCTGTAGATAATCAGATCCCTTCTAGTTTAGGTGTGGATAAGCATGATTTTCGGTTTGGAGGTTCTCCTATACTGGCTTCAGAGTACAACATTCATGAAAATCCAAAAAAGTCCAGTGATAGTCACCATAGCATTATTCCAGATCAAAATGCTACTAACACTGGAATTTTGTATGACCATATTAGACCAATTGTTGGAGGTCTGGAAACTCTAAGTATATGCCCAACGGATATTTGTGCTAATTTCAATCACTGCAAACCACCTATTGAAAGAACTAGGAAGGAGGACAATTTTGACAGCTGTTTGCAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAGTTTTATAAAGCGAAAAGTGGTTCTCGACACAAATCACATGAAACCGACTACTTCTGCTTGTTCTTCATCTGAGGTTCCCTATTTGTTCAATGAACGACCTGTTGAGTTCAGTCAAGTGGGACAACTTCCAGTCATGGGCTCTTCCGGAATGTTACTGCAGTCAGAAAATCAAGTACAACATTTAGAATCCAATGAAGTTTCCCATAGCAGAAATCCACAGTTATTTGACATGAAGACCGAACATATTTATAATAAAGTTCCAGTTTCTGATGAGTGGAAGGAGGACACTTCTATATTCGAATCGAGGATGGTATCTGGGGATGTTGAATCTGCATCTTCACCTATTAGGTCTGGAAATGTACAGGAGGCTGTGAATTCACTATGCAGCCATCGGGATCCTGTGAATTCACTCTTTAGCAATCAGGATCCTTGGAACTTACAGCATGATGGCCATTTTTTGCCTCCTAGACCAAATAAAATCCAACCAGGGAATGAAGCCATAGCGACCAGGGAACCCTTGACAGAGAGCCCTTTCAAGAATATCGGTGAAGTAAATACGGAAACACTTTTGGATGATGGAGTATGTCATCCTCAGGTTAACTCACACAAAGTAGGCTCTTCGGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAATCAGAACAGTCCTCCAACTCTGACTTACATGAGAGAAGTGATTCATGCGAGACTGCTGAAGGAGATGTTCAGAATAATAACGATGTCAGGTCAAAACTTTCAGAAAAGGCGAATCTTGGTTTTCCAATGTTAGATGGATTTGGCCATCTGCAGGTGATAAAGAACAGCGACCTTGAAGAACTAAGAGAGTTAGGTTCTGGCACCTTTGGCACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATAAAGCTTGCTGATTTGCACCACCCAAATGTAGTTGCATTTTATGGTGTTGTGCTTGATGGTCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTCAATGGCTCGCTCAGAAATGCTTTGCTAAAGAATGAAAAGAGTCTTGACAAGCGGAAGCTCCTCTTGATTGCTATGGATGTGTCTTTTGGAATGGAATACCTGCACAGTAGGAGTATTGTGCACTTTGACTTAAAAAGTGATAATCTGCTCGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGCTGATTTGGGCCTATCCAAGGTGAAACGTCAGACATTTATATCAGGTGGTGTGCGAGGAACACTTCCATGGATAGCACCCGAGCTTTTGAATGGGAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTGTTGTCTTGTGGGAGCTCCTTACTGGTGAAGAACCTTATGCAAATTTGCATTATGGGGCTATCATAGGTGGCATAGTAAGCAACACATTGCGACCGGAAGTACCGGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACAAGAATTGCGCTCCATGTCTGCAAAGGTTCCTCAGAAAGTATCCAATCAACCACAGTAA 4269 43.41 MAFDQNSIPTGLRPLNVARTLVEDSRVMPVATTTIMSNHSRDVASADSMPVPYKGNVSDMGFVGLGYGNVVTGFAPWCPRMPPPPLVRPATVPAVGLGCGSNLNVRGNYGGANAVELASSRMEVGVNQNPILSHRVGGGGVEFVSNNISMGLGDSTNLCNNVKADGDQISSDSTSAFSDRLGNSVGANVSDRVSQESGDGSILIKKVKFMCSFGGKIFPRPSDGMLRYVGGQTRIISVKRDVTFNELERKMVDTCGQAVVIKYQLPDEDLDALVSVSCPDDLDNMMDEYEKLVDRSSDRSAKLRMFLFSSSELDTSGMVQFGNLHDSGQRYVETVNETYDSTGGGITRKENFASTTSTQNSDLSGAEAIDISNNNLGVMSGPLSTTLSSPGGNSGISVAIGPGSMKVDPVSAVFVDASVLPSSIPVVNSVSPEASFQPDAELGRSAPVTLMQQQPGIDFPLPLSQLQPTVDPRQAACMDYIQRPQPGFLNPHHLGASGSMFMQRPTTLGTTSHQFVPAVHMTMAPSSSHPNIMPNTYQSLVQYPQSQMEYLVNESTFGPRFVQVSSEQGYNSHQVPAPPVSVGGLNQVPRSDQTVTSDELISYRQDQRENFTSPVFDSNFLYYSHRPEDHSTVQLQPIKNIAETGALRQQSTDQGVGMQARIFNPMDPQVGKPSVEAIGFSHHIEGQHVNESTLKDQCTIDHSRISALQDVLGRQGDIQSPHVAVVEQISKSSQVDTLQQHHAAVDNQIPSSLGVDKHDFRFGGSPILASEYNIHENPKKSSDSHHSIIPDQNATNTGILYDHIRPIVGGLETLSICPTDICANFNHCKPPIERTRKEDNFDSCLQPVSEREVLLDNSFIKRKVVLDTNHMKPTTSACSSSEVPYLFNERPVEFSQVGQLPVMGSSGMLLQSENQVQHLESNEVSHSRNPQLFDMKTEHIYNKVPVSDEWKEDTSIFESRMVSGDVESASSPIRSGNVQEAVNSLCSHRDPVNSLFSNQDPWNLQHDGHFLPPRPNKIQPGNEAIATREPLTESPFKNIGEVNTETLLDDGVCHPQVNSHKVGSSEEQIRKDLQAVAEGVAASVLQSEQSSNSDLHERSDSCETAEGDVQNNNDVRSKLSEKANLGFPMLDGFGHLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKLLLIAMDVSFGMEYLHSRSIVHFDLKSDNLLVNLRDPHRPICKVADLGLSKVKRQTFISGGVRGTLPWIAPELLNGSNMVSEKVDVFSFGVVLWELLTGEEPYANLHYGAIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAQELRSMSAKVPQKVSNQPQ 1422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33269593 33276162 - Sed0011317.4 Sed12g2318 733274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2318 1422 CDD STKc_MAP3K-like 1150 1406 - -
Sed12g2318 1422 Pfam PB1 domain 226 309 IPR000270 GO:0005515(InterPro)
Sed12g2318 1422 Gene3D Transferase(Phosphotransferase) domain 1 1232 1422 - -
Sed12g2318 1422 SUPERFAMILY CAD & PB1 domains 222 315 - -
Sed12g2318 1422 SMART PB1_new 221 310 IPR000270 GO:0005515(InterPro)
Sed12g2318 1422 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 226 310 - -
Sed12g2318 1422 CDD PB1_UP2 210 308 - -
Sed12g2318 1422 PANTHER SERINE-THREONINE PROTEIN KINASE 165 1410 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed12g2318 1422 Gene3D - 227 310 - -
Sed12g2318 1422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1269 1281 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 SMART serkin_6 1144 1409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 Pfam Protein tyrosine and serine/threonine kinase 1146 1406 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 ProSitePatterns Protein kinases ATP-binding region signature. 1150 1181 IPR017441 GO:0005524(InterPro)
Sed12g2318 1422 Gene3D Phosphorylase Kinase; domain 1 1137 1231 - -
Sed12g2318 1422 SUPERFAMILY Protein kinase-like (PK-like) 1136 1405 IPR011009 -
Sed12g2318 1422 ProSiteProfiles Protein kinase domain profile. 1144 1409 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 PRINTS Tyrosine kinase catalytic domain signature 1226 1239 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 PRINTS Tyrosine kinase catalytic domain signature 1333 1355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 PRINTS Tyrosine kinase catalytic domain signature 1377 1399 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 PRINTS Tyrosine kinase catalytic domain signature 1263 1281 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2318 1422 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1137 1231 - -
Sed12g2318 1422 MobiDBLite consensus disorder prediction 1085 1113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2316 Sed-Chr12:33269593 Sed12g2318 Sed-Chr12:33269593 0.00E+00 dispersed
Sed12g2318 Sed-Chr12:33269593 Sed12g2320 Sed-Chr12:33269593 0.00E+00 dispersed
Sed12g2317 Sed-Chr12:33269593 Sed12g2318 Sed-Chr12:33269593 0.00E+00 tandem
Sed12g2318 Sed-Chr12:33269593 Sed12g2319 Sed-Chr12:33269593 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80045 PF07714 PK_Tyr_Ser-Thr 3.40E-60 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2318 - - - 0.0