Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2320 ATGGCGTTTGACCAGAACTCGATTCCCACGGGCTTGCGGCCTTTAAATGTCGCTAGAACTTTAGTTGAAGATTCTCGGGTAATGCCGGTTGCTACTACTACGATTATGTCGAATCATTCCCGTGACGTTGCTAGTGCGGATTCTATGCCGGTTCCTTATAAGGGGAATGTCTCTGATATGGGATTTGTTGGCTTGGGGTATGGTAATGTGGTTACTGGTTTTGCTCCGTGGTGCCCTCGAATGCCTCCTCCTCCTCTTGTGCGTCCTGCCACGGTTCCTGCTGTTGGGCTTGGTTGCGGCTCGAACCTGAATGTCAGGGGCAATTACGGTGGTGCTAATGCTGTTGAGCTTGCTAGCAGTCGCATGGAAGTTGGGGTTAATCAGAATCCGATTTTGAGTCATCGAGTTGGGGGAGGTGGTGTAGAGTTTGTGAGCAATAATATCTCAATGGGGTTGGGGGATAGTACCAATTTATGTAATAATGTAAAGGCCGATGGTGATCAGATAAGTAGTGATAGTACTTCCGCATTTAGCGACCGTCTGGGAAATTCGGTTGGTGCGAATGTGTCTGATCGAGTGAGCCAGGAGAGTGGAGATGGTTCCATTCTGATTAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGGCCTAGTGATGGTATGTTGAGATATGTTGGGGGCCAGACCAGGATTATTAGTGTTAAAAGAGATGTGACTTTCAATGAGCTTGAGCGAAAGATGGTTGATACATGTGGGCAGGCTGTGGTTATTAAGTATCAGCTACCCGATGAGGATCTTGATGCCTTAGTGTCGGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTACGAGAAGTTAGTTGATAGGTCTTCAGATAGATCGGCTAAATTGAGGATGTTTTTGTTCTCTTCTTCAGAACTTGACACTTCAGGTATGGTGCAATTCGGAAATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGAGACATATGATAGCACTGGTGGTGGTATTACAAGAAAAGAGAACTTTGCAAGTACTACCTCAACTCAGAATTCTGACTTAAGTGGGGCTGAGGCAATTGATATCTCAAATAACAATCTAGGGGTTATGAGTGGGCCTCTATCCACAACATTGTCCTCACCTGGAGGAAATTCAGGTATTTCAGTTGCTATTGGTCCTGGATCAATGAAGGTAGATCCCGTTTCTGCAGTTTTTGTAGATGCCTCTGTCCTTCCATCAAGTATTCCTGTGGTTAACTCTGTTTCTCCTGAAGCTTCTTTCCAGCCAGATGCTGAGTTAGGAAGGTCTGCGCCTGTTACTCTAATGCAACAACAACCAGGTATTGACTTTCCTTTACCTTTGTCTCAATTGCAGCCTACTGTTGATCCTCGTCAAGCAGCATGTATGGACTATATACAACGTCCACAACCAGGTTTTTTAAATCCTCATCATTTAGGGGCATCTGGGTCTATGTTTATGCAACGACCAACTACTCTTGGAACCACCTCTCATCAGTTTGTCCCAGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCCCAATATTATGCCAAATACCTACCAATCATTGGTGCAGTATCCACAATCCCAGATGGAATATCTTGTGAACGAGAGCACATTTGGTCCAAGGTTTGTCCAGGTATCTTCAGAACAAGGCTACAACTCACACCAGGTTCCAGCTCCTCCGGTGTCAGTTGGAGGTTTAAATCAGGTACCCCGGTCTGATCAGACTGTTACATCTGATGAATTGATATCCTATCGTCAGGTAACTTTTCCTAAGAAGATTGAGGGATTGGATTACTCTGACTTATGCCAGAAAGCAGTGCCTCATGCTCATTCCAATTCTTTGTTGCAGGATCAAAGAGAAAATTTTACAAGCCCTGTATTTGATTCAAATTTTTTGTATTATAGTCATCGCCCTGAAGATCATTCAACAGTCCAGCTCCAGCCAATTAAAAATATTGCAGAAACTGGAGCTTTGAGGCAACAATCTACCGATCAAGGTGTTGGAATGCAAGCCAGGATCTTTAATCCTATGGATCCACAAGTTGGAAAACCTTCAGTGGAGGCAATTGGCTTCTCACATCATATTGAGGGTCAGCATGTGAATGAAAGCACTCTTAAAGATCAATGTACTATTGATCATAGTAGGATCTCGGCTCTACAGGATGTTCTTGGGAGGCAAGGTGATATTCAGTCACCTCATGTTGCTGTTGTAGAACAGATTTCAAAGTCTAGTCAAGTTGATACTCTCCAGCAGCATCATGCAGCTGTAGATAATCAGATCCCTTCTAGTTTAGGTGTGGATAAGCATGATTTTCGGTTTGGAGGTTCTCCTATACTGGCTTCAGAGTACAACATTCATGAAAATCCAAAAAAGTCCAGTGATAGTCACCATAGCATTATTCCAGATCAAAATGCTACTAACACTGGAATTTTGTATGACCATATTAGACCAATTGTTGGAGGTCTGGAAACTCTAAGTATATGCCCAACGGATATTTGTGCTAATTTCAATCACTGCAAACCACCTATTGAAAGAACTAGGAAGGAGGACAATTTTGACAGCTGTTTGCAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAGTTTTATAAAGCGAAAAGTGGTTCTCGACACAAATCACATGAAACCGACTACTTCTGCTTGTTCTTCATCTGAGGTTCCCTATTTGTTCAATGAACGACCTGTTGAGTTCAGTCAAGTGGGACAACTTCCAGTCATGGGCTCTTCCGGAATGTTACTGCAGTCAGAAAATCAAGTACAACATTTAGAATCCAATGAAGTTTCCCATAGCAGAAATCCACAGTTATTTGACATGAAGACCGAACATATTTATAATAAAGTTCCAGTTTCTGATGAGTGGAAGGAGGACACTTCTATATTCGAATCGAGGATGGTATCTGGGGATGTTGAATCTGCATCTTCACCTATTAGGTCTGGAAATGTACAGGAGGCTGTGAATTCACTATGCAGCCATCGGGATCCTGTGAATTCACTCTTTAGCAATCAGGATCCTTGGAACTTACAGCATGATGGCCATTTTTTGCCTCCTAGACCAAATAAAATCCAACCAGGGAATGAAGCCATAGCGACCAGGGAACCCTTGACAGAGAGCCCTTTCAAGAATATCGGTGAAGTAAATACGGAAACACTTTTGGATGATGGAGTATGTCATCCTCAGGTTAACTCACACAAAGTAGGCTCTTCGGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAATCAGAACAGTCCTCCAACTCTGACTTACATGAGAGAAGTGATTCATGCGAGACTGCTGAAGGAGATGTTCAGAATAATAACGATGTCAGGTCAAAACTTTCAGAAAAGGCGAATCTTGGTTTTCCAATGTTAGATGGATTTGGCCATCTGCAGGTGATAAAGAACAGCGACCTTGAAGAACTAAGAGAGTTAGGTTCTGGCACCTTTGGCACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATAAAGCTTGCTGATTTGCACCACCCAAATGTAGTTGCATTTTATGGTGTTGTGCTTGATGGTCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTCAATGGCTCGCTCAGAAATGCTTTGCTAAAGAATGAAAAGAGTCTTGACAAGCGGAAGCTCCTCTTGATTGCTATGGATGTGTCTTTTGGAATGGAATACCTGCACAGTAGGAGTATTGTGCACTTTGACTTAAAAAGTGATAATCTGCTCGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGCTGATTTGGGCCTATCCAAGGTGAAACGTCAGACATTTATATCAGGTGGTGTGCGAGGAACACTTCCATGGATAGCACCCGAGCTTTTGAATGGGAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTGTTGTCTTGTGGGAGCTCCTTACTGGTGAAGAACCTTATGCAAATTTGCATTATGGGGCTATCATAGGTGGCATAGTAAGCAACACATTGCGACCGGAAGTACCGGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACAAGAATTGCGCTCCATGTCTGCAAAGGTTCCTCAGAAAGTATCCAATCAACCACAGTAA 4359 43.36 MAFDQNSIPTGLRPLNVARTLVEDSRVMPVATTTIMSNHSRDVASADSMPVPYKGNVSDMGFVGLGYGNVVTGFAPWCPRMPPPPLVRPATVPAVGLGCGSNLNVRGNYGGANAVELASSRMEVGVNQNPILSHRVGGGGVEFVSNNISMGLGDSTNLCNNVKADGDQISSDSTSAFSDRLGNSVGANVSDRVSQESGDGSILIKKVKFMCSFGGKIFPRPSDGMLRYVGGQTRIISVKRDVTFNELERKMVDTCGQAVVIKYQLPDEDLDALVSVSCPDDLDNMMDEYEKLVDRSSDRSAKLRMFLFSSSELDTSGMVQFGNLHDSGQRYVETVNETYDSTGGGITRKENFASTTSTQNSDLSGAEAIDISNNNLGVMSGPLSTTLSSPGGNSGISVAIGPGSMKVDPVSAVFVDASVLPSSIPVVNSVSPEASFQPDAELGRSAPVTLMQQQPGIDFPLPLSQLQPTVDPRQAACMDYIQRPQPGFLNPHHLGASGSMFMQRPTTLGTTSHQFVPAVHMTMAPSSSHPNIMPNTYQSLVQYPQSQMEYLVNESTFGPRFVQVSSEQGYNSHQVPAPPVSVGGLNQVPRSDQTVTSDELISYRQVTFPKKIEGLDYSDLCQKAVPHAHSNSLLQDQRENFTSPVFDSNFLYYSHRPEDHSTVQLQPIKNIAETGALRQQSTDQGVGMQARIFNPMDPQVGKPSVEAIGFSHHIEGQHVNESTLKDQCTIDHSRISALQDVLGRQGDIQSPHVAVVEQISKSSQVDTLQQHHAAVDNQIPSSLGVDKHDFRFGGSPILASEYNIHENPKKSSDSHHSIIPDQNATNTGILYDHIRPIVGGLETLSICPTDICANFNHCKPPIERTRKEDNFDSCLQPVSEREVLLDNSFIKRKVVLDTNHMKPTTSACSSSEVPYLFNERPVEFSQVGQLPVMGSSGMLLQSENQVQHLESNEVSHSRNPQLFDMKTEHIYNKVPVSDEWKEDTSIFESRMVSGDVESASSPIRSGNVQEAVNSLCSHRDPVNSLFSNQDPWNLQHDGHFLPPRPNKIQPGNEAIATREPLTESPFKNIGEVNTETLLDDGVCHPQVNSHKVGSSEEQIRKDLQAVAEGVAASVLQSEQSSNSDLHERSDSCETAEGDVQNNNDVRSKLSEKANLGFPMLDGFGHLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKLLLIAMDVSFGMEYLHSRSIVHFDLKSDNLLVNLRDPHRPICKVADLGLSKVKRQTFISGGVRGTLPWIAPELLNGSNMVSEKVDVFSFGVVLWELLTGEEPYANLHYGAIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAQELRSMSAKVPQKVSNQPQ 1452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33269593 33276162 - Sed0011317.6 Sed12g2320 733276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2320 1452 PRINTS Tyrosine kinase catalytic domain signature 1256 1269 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 PRINTS Tyrosine kinase catalytic domain signature 1363 1385 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 PRINTS Tyrosine kinase catalytic domain signature 1293 1311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 PRINTS Tyrosine kinase catalytic domain signature 1407 1429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 SUPERFAMILY CAD & PB1 domains 222 315 - -
Sed12g2320 1452 Gene3D Phosphorylase Kinase; domain 1 1167 1261 - -
Sed12g2320 1452 Gene3D - 227 310 - -
Sed12g2320 1452 Pfam PB1 domain 226 309 IPR000270 GO:0005515(InterPro)
Sed12g2320 1452 CDD STKc_MAP3K-like 1180 1436 - -
Sed12g2320 1452 ProSiteProfiles Protein kinase domain profile. 1174 1439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 SMART PB1_new 221 310 IPR000270 GO:0005515(InterPro)
Sed12g2320 1452 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 226 310 - -
Sed12g2320 1452 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1167 1261 - -
Sed12g2320 1452 MobiDBLite consensus disorder prediction 1115 1143 - -
Sed12g2320 1452 CDD PB1_UP2 210 308 - -
Sed12g2320 1452 Gene3D Transferase(Phosphotransferase) domain 1 1262 1452 - -
Sed12g2320 1452 PANTHER SERINE-THREONINE PROTEIN KINASE 165 1440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed12g2320 1452 SMART serkin_6 1174 1439 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 Pfam Protein tyrosine and serine/threonine kinase 1176 1436 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2320 1452 ProSitePatterns Protein kinases ATP-binding region signature. 1180 1211 IPR017441 GO:0005524(InterPro)
Sed12g2320 1452 SUPERFAMILY Protein kinase-like (PK-like) 1166 1435 IPR011009 -
Sed12g2320 1452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1299 1311 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2318 Sed-Chr12:33269593 Sed12g2320 Sed-Chr12:33269593 0.00E+00 dispersed
Sed12g2320 Sed-Chr12:33269593 Sed13g1530 Sed-Chr13:20455131 2.20E-47 dispersed
Sed12g2319 Sed-Chr12:33269593 Sed12g2320 Sed-Chr12:33269593 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80047 PF07714 PK_Tyr_Ser-Thr 3.60E-60 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2320 - - - 0.0