Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2320 | ATGGCGTTTGACCAGAACTCGATTCCCACGGGCTTGCGGCCTTTAAATGTCGCTAGAACTTTAGTTGAAGATTCTCGGGTAATGCCGGTTGCTACTACTACGATTATGTCGAATCATTCCCGTGACGTTGCTAGTGCGGATTCTATGCCGGTTCCTTATAAGGGGAATGTCTCTGATATGGGATTTGTTGGCTTGGGGTATGGTAATGTGGTTACTGGTTTTGCTCCGTGGTGCCCTCGAATGCCTCCTCCTCCTCTTGTGCGTCCTGCCACGGTTCCTGCTGTTGGGCTTGGTTGCGGCTCGAACCTGAATGTCAGGGGCAATTACGGTGGTGCTAATGCTGTTGAGCTTGCTAGCAGTCGCATGGAAGTTGGGGTTAATCAGAATCCGATTTTGAGTCATCGAGTTGGGGGAGGTGGTGTAGAGTTTGTGAGCAATAATATCTCAATGGGGTTGGGGGATAGTACCAATTTATGTAATAATGTAAAGGCCGATGGTGATCAGATAAGTAGTGATAGTACTTCCGCATTTAGCGACCGTCTGGGAAATTCGGTTGGTGCGAATGTGTCTGATCGAGTGAGCCAGGAGAGTGGAGATGGTTCCATTCTGATTAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGGCCTAGTGATGGTATGTTGAGATATGTTGGGGGCCAGACCAGGATTATTAGTGTTAAAAGAGATGTGACTTTCAATGAGCTTGAGCGAAAGATGGTTGATACATGTGGGCAGGCTGTGGTTATTAAGTATCAGCTACCCGATGAGGATCTTGATGCCTTAGTGTCGGTTTCATGCCCTGATGATCTTGACAATATGATGGATGAGTACGAGAAGTTAGTTGATAGGTCTTCAGATAGATCGGCTAAATTGAGGATGTTTTTGTTCTCTTCTTCAGAACTTGACACTTCAGGTATGGTGCAATTCGGAAATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGAGACATATGATAGCACTGGTGGTGGTATTACAAGAAAAGAGAACTTTGCAAGTACTACCTCAACTCAGAATTCTGACTTAAGTGGGGCTGAGGCAATTGATATCTCAAATAACAATCTAGGGGTTATGAGTGGGCCTCTATCCACAACATTGTCCTCACCTGGAGGAAATTCAGGTATTTCAGTTGCTATTGGTCCTGGATCAATGAAGGTAGATCCCGTTTCTGCAGTTTTTGTAGATGCCTCTGTCCTTCCATCAAGTATTCCTGTGGTTAACTCTGTTTCTCCTGAAGCTTCTTTCCAGCCAGATGCTGAGTTAGGAAGGTCTGCGCCTGTTACTCTAATGCAACAACAACCAGGTATTGACTTTCCTTTACCTTTGTCTCAATTGCAGCCTACTGTTGATCCTCGTCAAGCAGCATGTATGGACTATATACAACGTCCACAACCAGGTTTTTTAAATCCTCATCATTTAGGGGCATCTGGGTCTATGTTTATGCAACGACCAACTACTCTTGGAACCACCTCTCATCAGTTTGTCCCAGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCCCAATATTATGCCAAATACCTACCAATCATTGGTGCAGTATCCACAATCCCAGATGGAATATCTTGTGAACGAGAGCACATTTGGTCCAAGGTTTGTCCAGGTATCTTCAGAACAAGGCTACAACTCACACCAGGTTCCAGCTCCTCCGGTGTCAGTTGGAGGTTTAAATCAGGTACCCCGGTCTGATCAGACTGTTACATCTGATGAATTGATATCCTATCGTCAGGTAACTTTTCCTAAGAAGATTGAGGGATTGGATTACTCTGACTTATGCCAGAAAGCAGTGCCTCATGCTCATTCCAATTCTTTGTTGCAGGATCAAAGAGAAAATTTTACAAGCCCTGTATTTGATTCAAATTTTTTGTATTATAGTCATCGCCCTGAAGATCATTCAACAGTCCAGCTCCAGCCAATTAAAAATATTGCAGAAACTGGAGCTTTGAGGCAACAATCTACCGATCAAGGTGTTGGAATGCAAGCCAGGATCTTTAATCCTATGGATCCACAAGTTGGAAAACCTTCAGTGGAGGCAATTGGCTTCTCACATCATATTGAGGGTCAGCATGTGAATGAAAGCACTCTTAAAGATCAATGTACTATTGATCATAGTAGGATCTCGGCTCTACAGGATGTTCTTGGGAGGCAAGGTGATATTCAGTCACCTCATGTTGCTGTTGTAGAACAGATTTCAAAGTCTAGTCAAGTTGATACTCTCCAGCAGCATCATGCAGCTGTAGATAATCAGATCCCTTCTAGTTTAGGTGTGGATAAGCATGATTTTCGGTTTGGAGGTTCTCCTATACTGGCTTCAGAGTACAACATTCATGAAAATCCAAAAAAGTCCAGTGATAGTCACCATAGCATTATTCCAGATCAAAATGCTACTAACACTGGAATTTTGTATGACCATATTAGACCAATTGTTGGAGGTCTGGAAACTCTAAGTATATGCCCAACGGATATTTGTGCTAATTTCAATCACTGCAAACCACCTATTGAAAGAACTAGGAAGGAGGACAATTTTGACAGCTGTTTGCAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAGTTTTATAAAGCGAAAAGTGGTTCTCGACACAAATCACATGAAACCGACTACTTCTGCTTGTTCTTCATCTGAGGTTCCCTATTTGTTCAATGAACGACCTGTTGAGTTCAGTCAAGTGGGACAACTTCCAGTCATGGGCTCTTCCGGAATGTTACTGCAGTCAGAAAATCAAGTACAACATTTAGAATCCAATGAAGTTTCCCATAGCAGAAATCCACAGTTATTTGACATGAAGACCGAACATATTTATAATAAAGTTCCAGTTTCTGATGAGTGGAAGGAGGACACTTCTATATTCGAATCGAGGATGGTATCTGGGGATGTTGAATCTGCATCTTCACCTATTAGGTCTGGAAATGTACAGGAGGCTGTGAATTCACTATGCAGCCATCGGGATCCTGTGAATTCACTCTTTAGCAATCAGGATCCTTGGAACTTACAGCATGATGGCCATTTTTTGCCTCCTAGACCAAATAAAATCCAACCAGGGAATGAAGCCATAGCGACCAGGGAACCCTTGACAGAGAGCCCTTTCAAGAATATCGGTGAAGTAAATACGGAAACACTTTTGGATGATGGAGTATGTCATCCTCAGGTTAACTCACACAAAGTAGGCTCTTCGGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAATCAGAACAGTCCTCCAACTCTGACTTACATGAGAGAAGTGATTCATGCGAGACTGCTGAAGGAGATGTTCAGAATAATAACGATGTCAGGTCAAAACTTTCAGAAAAGGCGAATCTTGGTTTTCCAATGTTAGATGGATTTGGCCATCTGCAGGTGATAAAGAACAGCGACCTTGAAGAACTAAGAGAGTTAGGTTCTGGCACCTTTGGCACTGTTTATCATGGAAAATGGAGGGGAACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAGCCTTCTGAACAAGATCGCATGAGAGAGGATTTTTGGAATGAAGCAATAAAGCTTGCTGATTTGCACCACCCAAATGTAGTTGCATTTTATGGTGTTGTGCTTGATGGTCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTCAATGGCTCGCTCAGAAATGCTTTGCTAAAGAATGAAAAGAGTCTTGACAAGCGGAAGCTCCTCTTGATTGCTATGGATGTGTCTTTTGGAATGGAATACCTGCACAGTAGGAGTATTGTGCACTTTGACTTAAAAAGTGATAATCTGCTCGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGCTGATTTGGGCCTATCCAAGGTGAAACGTCAGACATTTATATCAGGTGGTGTGCGAGGAACACTTCCATGGATAGCACCCGAGCTTTTGAATGGGAGCAATATGGTGTCCGAGAAGGTTGATGTGTTTTCCTTTGGTGTTGTCTTGTGGGAGCTCCTTACTGGTGAAGAACCTTATGCAAATTTGCATTATGGGGCTATCATAGGTGGCATAGTAAGCAACACATTGCGACCGGAAGTACCGGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCAGAGCCATCAGAGAGGCCAAGCTTCACTGAAATTGCACAAGAATTGCGCTCCATGTCTGCAAAGGTTCCTCAGAAAGTATCCAATCAACCACAGTAA | 4359 | 43.36 | MAFDQNSIPTGLRPLNVARTLVEDSRVMPVATTTIMSNHSRDVASADSMPVPYKGNVSDMGFVGLGYGNVVTGFAPWCPRMPPPPLVRPATVPAVGLGCGSNLNVRGNYGGANAVELASSRMEVGVNQNPILSHRVGGGGVEFVSNNISMGLGDSTNLCNNVKADGDQISSDSTSAFSDRLGNSVGANVSDRVSQESGDGSILIKKVKFMCSFGGKIFPRPSDGMLRYVGGQTRIISVKRDVTFNELERKMVDTCGQAVVIKYQLPDEDLDALVSVSCPDDLDNMMDEYEKLVDRSSDRSAKLRMFLFSSSELDTSGMVQFGNLHDSGQRYVETVNETYDSTGGGITRKENFASTTSTQNSDLSGAEAIDISNNNLGVMSGPLSTTLSSPGGNSGISVAIGPGSMKVDPVSAVFVDASVLPSSIPVVNSVSPEASFQPDAELGRSAPVTLMQQQPGIDFPLPLSQLQPTVDPRQAACMDYIQRPQPGFLNPHHLGASGSMFMQRPTTLGTTSHQFVPAVHMTMAPSSSHPNIMPNTYQSLVQYPQSQMEYLVNESTFGPRFVQVSSEQGYNSHQVPAPPVSVGGLNQVPRSDQTVTSDELISYRQVTFPKKIEGLDYSDLCQKAVPHAHSNSLLQDQRENFTSPVFDSNFLYYSHRPEDHSTVQLQPIKNIAETGALRQQSTDQGVGMQARIFNPMDPQVGKPSVEAIGFSHHIEGQHVNESTLKDQCTIDHSRISALQDVLGRQGDIQSPHVAVVEQISKSSQVDTLQQHHAAVDNQIPSSLGVDKHDFRFGGSPILASEYNIHENPKKSSDSHHSIIPDQNATNTGILYDHIRPIVGGLETLSICPTDICANFNHCKPPIERTRKEDNFDSCLQPVSEREVLLDNSFIKRKVVLDTNHMKPTTSACSSSEVPYLFNERPVEFSQVGQLPVMGSSGMLLQSENQVQHLESNEVSHSRNPQLFDMKTEHIYNKVPVSDEWKEDTSIFESRMVSGDVESASSPIRSGNVQEAVNSLCSHRDPVNSLFSNQDPWNLQHDGHFLPPRPNKIQPGNEAIATREPLTESPFKNIGEVNTETLLDDGVCHPQVNSHKVGSSEEQIRKDLQAVAEGVAASVLQSEQSSNSDLHERSDSCETAEGDVQNNNDVRSKLSEKANLGFPMLDGFGHLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNEKSLDKRKLLLIAMDVSFGMEYLHSRSIVHFDLKSDNLLVNLRDPHRPICKVADLGLSKVKRQTFISGGVRGTLPWIAPELLNGSNMVSEKVDVFSFGVVLWELLTGEEPYANLHYGAIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAQELRSMSAKVPQKVSNQPQ | 1452 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 33269593 | 33276162 | - | Sed0011317.6 | Sed12g2320 | 733276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2320 | 1452 | PRINTS | Tyrosine kinase catalytic domain signature | 1256 | 1269 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | PRINTS | Tyrosine kinase catalytic domain signature | 1363 | 1385 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | PRINTS | Tyrosine kinase catalytic domain signature | 1293 | 1311 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | PRINTS | Tyrosine kinase catalytic domain signature | 1407 | 1429 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | SUPERFAMILY | CAD & PB1 domains | 222 | 315 | - | - | |
Sed12g2320 | 1452 | Gene3D | Phosphorylase Kinase; domain 1 | 1167 | 1261 | - | - | |
Sed12g2320 | 1452 | Gene3D | - | 227 | 310 | - | - | |
Sed12g2320 | 1452 | Pfam | PB1 domain | 226 | 309 | IPR000270 | GO:0005515(InterPro) | |
Sed12g2320 | 1452 | CDD | STKc_MAP3K-like | 1180 | 1436 | - | - | |
Sed12g2320 | 1452 | ProSiteProfiles | Protein kinase domain profile. | 1174 | 1439 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | SMART | PB1_new | 221 | 310 | IPR000270 | GO:0005515(InterPro) | |
Sed12g2320 | 1452 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 226 | 310 | - | - | |
Sed12g2320 | 1452 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1167 | 1261 | - | - | |
Sed12g2320 | 1452 | MobiDBLite | consensus disorder prediction | 1115 | 1143 | - | - | |
Sed12g2320 | 1452 | CDD | PB1_UP2 | 210 | 308 | - | - | |
Sed12g2320 | 1452 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1262 | 1452 | - | - | |
Sed12g2320 | 1452 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 165 | 1440 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed12g2320 | 1452 | SMART | serkin_6 | 1174 | 1439 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | Pfam | Protein tyrosine and serine/threonine kinase | 1176 | 1436 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2320 | 1452 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1180 | 1211 | IPR017441 | GO:0005524(InterPro) | |
Sed12g2320 | 1452 | SUPERFAMILY | Protein kinase-like (PK-like) | 1166 | 1435 | IPR011009 | - | |
Sed12g2320 | 1452 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1299 | 1311 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g2318 | Sed-Chr12:33269593 | Sed12g2320 | Sed-Chr12:33269593 | 0.00E+00 | dispersed | |
Sed12g2320 | Sed-Chr12:33269593 | Sed13g1530 | Sed-Chr13:20455131 | 2.20E-47 | dispersed | |
Sed12g2319 | Sed-Chr12:33269593 | Sed12g2320 | Sed-Chr12:33269593 | 0.00E+00 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80047 | PF07714 | PK_Tyr_Ser-Thr | 3.60E-60 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2320 | - | - | - | 0.0 |