Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2342 ATGGGCGCAACCATTCTCACCGATCTCGGGGCTGAGATTTTCATTCCGGTCTGCGCCGTTGTCGGAATCCTCTTCTCCTTAGTCCAGTGGTACTACGTCGCTCAGGTTAAGCTCTCCCCCGGCCGGGATTCCGCTCACAACAACGCCGCCGGTTCCAAGAATGGCTACTCCGATTACTTAATCGAGGAAGAAGAAGGCGTCAACGACCACAACGTTGTTATCAAGTGTGCTGAGATTCAGAACGCCATTTCCGAAGGTGCAACCTCTTTCCTTTTTACGGAGTACAAGTATGTCGGCATCTTTATGGTGTTGTTTGCAGGCTTGATTTTTGTATTCCTCGGTTCAGTGGAAAGTTTTAGTACCAAGCCTCAACCGTGCTCATATGACAAAACAAGGACTTGTAAGCCAGCTTTGGCGACGGCTATATTTAGCACTGTATCTTTTTTACTTGGTGCAGTTACCTCAGTAGTTTCTGGTTTCCTTGGAATGAAAATTGCTACATATGCAAATGCCAGAACCACCTTGGAGGCAAGGAAAGGGGTTGGAAAGGCGTTTATTATTGCTTTTAGGTCTGGTGCAGTCATGGGCTTCCTCCTTGCTGCCAATGGTCTCTTGGTTTTGTATATTACCATTAATCTCTTCAAAATATATTATGGTGATGATTGGGGTGGCCTTTTCGAGTCAATCACTGGTTACGGTCTTGGTGGATCTTCCATGGCTCTCTTTGGTAGAGTTGGTGGTGGGATCTATACCAAAGCTGCTGATGTTGGTGCTGACCTTGTGGGCAAGGTGGAAAGGAACATTCCTGAAGATGACCCCAGAAACCCAGCTGTGATTGCTGACAATGTTGGTGACAATGTTGGGGATATAGCCGGTATGGGATCTGATCTTTTTGGTTCATATGCTGAATCTTCCTGTGCAGCTCTTGTTGTTGCTTCTATCTCCTCTTTCGGCAACAACCATGAGTTGACACCAATGCTCTATCCTCTCCTCGTCAGTTCTATGGGTATCCTGATTTGCCTAATCACCACCTTATTTGCAACTGATTTCTTTGAGATCAAGGCTGTTAAGGAAATTGAACCAGCGTTGAAGAAGCAACTCGTAATTTCCACTGTTCTTATGACCATTGGAATTGCAATTGTAACTTGGTTGGCTGTTCCATCATCATTCACCATTTTCAACTTTGGAACTCAAAAAGTTGTGCAAAGCTGGAAATTGTTCTTGTGTGTTGCTGTTGGTCTCTGGGCTGGGCTTATAATTGGATTTGTGACAGAGTACTACACGAGCAATGCGTACAGCCCTGTGCAAGATGTTGCTGGTTCTTGCCGAACTGGAGCTGCCACCAATGTCATTTTTGGGTTGGCATTGGGATACAAATCTGTCATTATCCCTATTTTTGCAATTGCGGCCAGCATTTTTGTGAGTTTCACCTTTGCTGCCATGTACGGCATTGCAGTAGCTGCCCTTGGAATGCTGAGTACCATAGCTACAGGTTTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGCATTGCTGAGATGGCAGGCATGAGCCACAGAATTCGGGAGAGAACCGACGCCCTCGATGCTGCTGGAAACACCACTGCAGCCATTGGAAAGGGTTTTGCCATTGGTTCAGCCGCCCTTGTGTCTCTTGCCCTTTTCGGTGCCTTTGTTAGCCGTGCTGGTGTCACTTCTGTTGACGTCTTGACGCCCAAAGTTTTCATTGGTTTGATCGTGGGTGCTATGCTTCCATACTGGTTTTCTGCCATGACAATGAAGAGTGTTGGTAGTGCAGCCCTTAAGATGGTTGAGGAGGTTCGAAGGCAATTCAACACCATCCCAGGTCTCATGGAGGGTACCGCCAAGCCCGACTACGCAACATGTGTCAAGATCTCAACTGATGCTTCTATCAAGGAGATGATCCCACCTGGTGCCCTTGTCATGTTGACGCCACTAATTGTCGGTATCCTATTCGGAGTTGAAACTCTTTCTGGTGTCCTTGCCGGATCCCTTGTTTCTGGTGTGCAGATTGCCATCTCTGCATCCAACACCGGAGGTGCCTGGGATAACGCCAAGAAGTACATCGAGGCTGGTGCCTCAGAGCATGCAAGAACCCTTGGCCCGAAAGGATCCGACCCACACAAAGCCGCTGTTATCGGTGACACAATCGGAGACCCGCTCAAGGATACATCAGGACCTTCTCTGAACATTCTGATCAAGTTGATGGCTGTGGAGTCCCTTGTGTTTGCTCCTTTCTTCGCCACCCACGGCGGTCTTCTCTTCAAGCTCTTCTAA 2307 47.72 MGATILTDLGAEIFIPVCAVVGILFSLVQWYYVAQVKLSPGRDSAHNNAAGSKNGYSDYLIEEEEGVNDHNVVIKCAEIQNAISEGATSFLFTEYKYVGIFMVLFAGLIFVFLGSVESFSTKPQPCSYDKTRTCKPALATAIFSTVSFLLGAVTSVVSGFLGMKIATYANARTTLEARKGVGKAFIIAFRSGAVMGFLLAANGLLVLYITINLFKIYYGDDWGGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGNNHELTPMLYPLLVSSMGILICLITTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGIAIVTWLAVPSSFTIFNFGTQKVVQSWKLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAGSCRTGAATNVIFGLALGYKSVIIPIFAIAASIFVSFTFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGVTSVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKLF 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33387368 33392985 - Sed0015890.1 Sed12g2342 733298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2342 768 Pfam Inorganic H+ pyrophosphatase 74 753 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed12g2342 768 NCBIfam V-type H(+)-translocating pyrophosphatase 11 763 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed12g2342 768 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 758 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed12g2342 768 PIRSF H+-PPtase 11 766 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Sed12g2342 768 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 7 766 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1959 Sed-Chr3:13592004 Sed12g2342 Sed-Chr12:33387368 0.00E+00 dispersed
Sed04g2316 Sed-Chr4:36809669 Sed12g2342 Sed-Chr12:33387368 8.90E-128 transposed
Sed12g2342 Sed-Chr12:33387368 Sed08g0630 Sed-Chr8:4396998 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2342 K23025 - csv:101222673 1404.42