Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2347 ATGGCGGATGTGCAGAAGCTGATGAAAGAGATTGAGGAAAAGGCTGTTCTTCTCGGGATAGATTTTTCTAAGGTTGATTTTGATTCTATCGAACTCCCTCCAGGCGAGGATTTTGGAATTATTAGTGATGATGAAGATCTTCTGCAGGAGCTTGAGCTCCTGCAAGAGGAAAGTTTAGAGATTGAATCCGTGGACCGAAGCTGTATAGTTGTTGACAATCTTCCCGTGGTTCATCCGGACAAGTTCGAGCTTCTTGAACGCCATGTTCGTGAGATTTTTGGAGAACCGAAGAAGAATATAAAAGCCTCTATAGCGAGTCTATGGATGCCTGTTGAGCCTTCTACACAAAAAACTTTAGGGTACTGTTTTATTGAGTATGCCAATTCGAAGGATGCTGAACTTGCCAAACAGAAGATGGATGGGCACAGGCTGGATAAAAAACATACTTTAATCGTTAACACGTTTGAGGAGTTTGATCGATTGATGAAAGTCCTGAATGAGTGGGTCCAGCCTGAAATTGTCCCATATAGTCCCGGGGAATTTCTTCAACGGTGGCTTACGGATGAAAAGGCGCGAGATCAGTTTGTTATTCGTTCGGGTTCTGATACTGAGGTCTTCTGGAATGACGCTAGAGAATTGAAGCCCGAGCCTGTTTACAAGCGTCAATTTTGGACAGAGAGTTTTGTGCAGTGGTCTTCCTTGGGGACTTACCTAGCGACAGTTCACCGACAGGGTGTTGCAGTTTGGGGTGGAGTAGATACCTTTAACCGTTTGATGCGTTTTGCCCATCGACAGGTTAAATTGATTGAATTTTCTCCTGGTGAGAGATTTCTAGTGACTTATAGCAGCCATGAGCCCAACAACCCTTGTGATGAAAGTAGCATTGAGATCAATATGTTTGATGTGAGAACTGGCAAACTTATGACAAATTTCACGGGACCTCCTGATGATTTTTCTATTGGAGGAACTGGTGGGGTTGCTGGCATATCATGGCCTGTTCTCAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCATGATTGGGAAGAACGTGATTTCAGTCTATAAGACAGGGACTTTCTCCATTATTGACAAAAAATCTTTGAAGGTTAAAAATGTTATGGATTTCTGCTGGTCCCCTACGGATCCCATCATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTAGTTCAAATCCCTGGCACGGAGGAGTTGAGACAAAAAAATCTTTTCAATGTTAGCGATTGCAAGATGTACTGGCAAAGCAATGGAGATTATCTTGCTGTCAAGGTGGATAGATATACCAAGACGAAGAAAAGCACATACACAGGGTTCGAGATTTTTCGCATAAAAGAGCGGGATATACCTATTGAGGTGTTGGAGCTCGAGAACAAGAACGACAAGATAATTGCATTCGCTTGGGAGCCAAAGGGCCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGACATTAGCTTTTACTCTATGCGAAGCACTCGCAGCAGTGGCCGAGTATCGAAACTTACAACTCTAAAAGGAAAACAGGCCAACTCTCTTTTCTGGTCACCTACCGGACGCTTCATTGTTCTAGCTGGTCTGAAAGGTTTCAACGGAGAGTTGGAGTTCTTTGATGTTGATGAGCTAGAGACAATGGCGACCACCGAGCACTTCATGGCGACTGATATTGAATGGGATCCTAGTGGAAGGTATGTTGCAACTGCTGTAACTTCTGTTCATGAGATGGAAAATGGCCTCAACATATGGACCTTTCATGGAAAGCTCCTCTATCGAGTCTTGAAGGACCTTTTCTTTCAGTTTGCATGGCGTCCGAGGCCACCGTCGTTGTTGAGTCCAGAGAAAGAGGAAGAGATAGTAAAGAATTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCAATGCTACTGAGCGAGCAGGATCGAGAGAAACGGAAAATGTTAAAAGAGGAGTGGAAGAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGATGAGAAGTTGTTGCGGCAGAAACTCCGGGATGGCGAAGCCAGTGACGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGATTTTGGATGTTTCGGAGGAAATTTTGTCCTTCGATTATGTGCAGGAATGA 2190 44.34 MADVQKLMKEIEEKAVLLGIDFSKVDFDSIELPPGEDFGIISDDEDLLQELELLQEESLEIESVDRSCIVVDNLPVVHPDKFELLERHVREIFGEPKKNIKASIASLWMPVEPSTQKTLGYCFIEYANSKDAELAKQKMDGHRLDKKHTLIVNTFEEFDRLMKVLNEWVQPEIVPYSPGEFLQRWLTDEKARDQFVIRSGSDTEVFWNDARELKPEPVYKRQFWTESFVQWSSLGTYLATVHRQGVAVWGGVDTFNRLMRFAHRQVKLIEFSPGERFLVTYSSHEPNNPCDESSIEINMFDVRTGKLMTNFTGPPDDFSIGGTGGVAGISWPVLRWGGGKDDKYFAMIGKNVISVYKTGTFSIIDKKSLKVKNVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPGTEELRQKNLFNVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFEIFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTRSSGRVSKLTTLKGKQANSLFWSPTGRFIVLAGLKGFNGELEFFDVDELETMATTEHFMATDIEWDPSGRYVATAVTSVHEMENGLNIWTFHGKLLYRVLKDLFFQFAWRPRPPSLLSPEKEEEIVKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKEEWKKWVNEWKRLHEDEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEILSFDYVQE 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33430148 33433678 + Sed0010327.1 Sed12g2347 733303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2347 729 FunFam Eukaryotic translation initiation factor 3 subunit B 191 392 - -
Sed12g2347 729 Pfam Eukaryotic translation initiation factor eIF2A 416 615 IPR013979 -
Sed12g2347 729 CDD RRM_eIF3B 67 153 IPR034363 -
Sed12g2347 729 Gene3D - 410 638 IPR015943 GO:0005515(InterPro)
Sed12g2347 729 SUPERFAMILY RNA-binding domain, RBD 61 154 IPR035979 GO:0003676(InterPro)
Sed12g2347 729 Gene3D - 185 392 IPR015943 GO:0005515(InterPro)
Sed12g2347 729 SMART rrm1_1 68 153 IPR000504 GO:0003723(InterPro)
Sed12g2347 729 FunFam Eukaryotic translation initiation factor 3 subunit B 63 164 - -
Sed12g2347 729 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 157 IPR000504 GO:0003723(InterPro)
Sed12g2347 729 FunFam Eukaryotic translation initiation factor 3 subunit B 421 636 - -
Sed12g2347 729 PIRSF Transl_init_eIF3b 8 723 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed12g2347 729 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 55 723 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed12g2347 729 SUPERFAMILY DPP6 N-terminal domain-like 227 610 - -
Sed12g2347 729 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 42 718 IPR011400 GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
Sed12g2347 729 Pfam RNA recognition motif 104 147 IPR000504 GO:0003723(InterPro)
Sed12g2347 729 Gene3D - 63 164 IPR012677 -
Sed12g2347 729 Coils Coil 697 717 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0023 Sed-Chr8:81324 Sed12g2347 Sed-Chr12:33430148 0.00E+00 dispersed
Sed08g0024 Sed-Chr8:81324 Sed12g2347 Sed-Chr12:33430148 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2347 K03253 - csv:101213144 1172.53