Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2347 | ATGGCGGATGTGCAGAAGCTGATGAAAGAGATTGAGGAAAAGGCTGTTCTTCTCGGGATAGATTTTTCTAAGGTTGATTTTGATTCTATCGAACTCCCTCCAGGCGAGGATTTTGGAATTATTAGTGATGATGAAGATCTTCTGCAGGAGCTTGAGCTCCTGCAAGAGGAAAGTTTAGAGATTGAATCCGTGGACCGAAGCTGTATAGTTGTTGACAATCTTCCCGTGGTTCATCCGGACAAGTTCGAGCTTCTTGAACGCCATGTTCGTGAGATTTTTGGAGAACCGAAGAAGAATATAAAAGCCTCTATAGCGAGTCTATGGATGCCTGTTGAGCCTTCTACACAAAAAACTTTAGGGTACTGTTTTATTGAGTATGCCAATTCGAAGGATGCTGAACTTGCCAAACAGAAGATGGATGGGCACAGGCTGGATAAAAAACATACTTTAATCGTTAACACGTTTGAGGAGTTTGATCGATTGATGAAAGTCCTGAATGAGTGGGTCCAGCCTGAAATTGTCCCATATAGTCCCGGGGAATTTCTTCAACGGTGGCTTACGGATGAAAAGGCGCGAGATCAGTTTGTTATTCGTTCGGGTTCTGATACTGAGGTCTTCTGGAATGACGCTAGAGAATTGAAGCCCGAGCCTGTTTACAAGCGTCAATTTTGGACAGAGAGTTTTGTGCAGTGGTCTTCCTTGGGGACTTACCTAGCGACAGTTCACCGACAGGGTGTTGCAGTTTGGGGTGGAGTAGATACCTTTAACCGTTTGATGCGTTTTGCCCATCGACAGGTTAAATTGATTGAATTTTCTCCTGGTGAGAGATTTCTAGTGACTTATAGCAGCCATGAGCCCAACAACCCTTGTGATGAAAGTAGCATTGAGATCAATATGTTTGATGTGAGAACTGGCAAACTTATGACAAATTTCACGGGACCTCCTGATGATTTTTCTATTGGAGGAACTGGTGGGGTTGCTGGCATATCATGGCCTGTTCTCAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCATGATTGGGAAGAACGTGATTTCAGTCTATAAGACAGGGACTTTCTCCATTATTGACAAAAAATCTTTGAAGGTTAAAAATGTTATGGATTTCTGCTGGTCCCCTACGGATCCCATCATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTAGTTCAAATCCCTGGCACGGAGGAGTTGAGACAAAAAAATCTTTTCAATGTTAGCGATTGCAAGATGTACTGGCAAAGCAATGGAGATTATCTTGCTGTCAAGGTGGATAGATATACCAAGACGAAGAAAAGCACATACACAGGGTTCGAGATTTTTCGCATAAAAGAGCGGGATATACCTATTGAGGTGTTGGAGCTCGAGAACAAGAACGACAAGATAATTGCATTCGCTTGGGAGCCAAAGGGCCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGACATTAGCTTTTACTCTATGCGAAGCACTCGCAGCAGTGGCCGAGTATCGAAACTTACAACTCTAAAAGGAAAACAGGCCAACTCTCTTTTCTGGTCACCTACCGGACGCTTCATTGTTCTAGCTGGTCTGAAAGGTTTCAACGGAGAGTTGGAGTTCTTTGATGTTGATGAGCTAGAGACAATGGCGACCACCGAGCACTTCATGGCGACTGATATTGAATGGGATCCTAGTGGAAGGTATGTTGCAACTGCTGTAACTTCTGTTCATGAGATGGAAAATGGCCTCAACATATGGACCTTTCATGGAAAGCTCCTCTATCGAGTCTTGAAGGACCTTTTCTTTCAGTTTGCATGGCGTCCGAGGCCACCGTCGTTGTTGAGTCCAGAGAAAGAGGAAGAGATAGTAAAGAATTTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGATGTATCAATGCTACTGAGCGAGCAGGATCGAGAGAAACGGAAAATGTTAAAAGAGGAGTGGAAGAAGTGGGTGAATGAATGGAAGAGATTGCACGAAGATGAGAAGTTGTTGCGGCAGAAACTCCGGGATGGCGAAGCCAGTGACGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGATTTTGGATGTTTCGGAGGAAATTTTGTCCTTCGATTATGTGCAGGAATGA | 2190 | 44.34 | MADVQKLMKEIEEKAVLLGIDFSKVDFDSIELPPGEDFGIISDDEDLLQELELLQEESLEIESVDRSCIVVDNLPVVHPDKFELLERHVREIFGEPKKNIKASIASLWMPVEPSTQKTLGYCFIEYANSKDAELAKQKMDGHRLDKKHTLIVNTFEEFDRLMKVLNEWVQPEIVPYSPGEFLQRWLTDEKARDQFVIRSGSDTEVFWNDARELKPEPVYKRQFWTESFVQWSSLGTYLATVHRQGVAVWGGVDTFNRLMRFAHRQVKLIEFSPGERFLVTYSSHEPNNPCDESSIEINMFDVRTGKLMTNFTGPPDDFSIGGTGGVAGISWPVLRWGGGKDDKYFAMIGKNVISVYKTGTFSIIDKKSLKVKNVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPGTEELRQKNLFNVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFEIFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTRSSGRVSKLTTLKGKQANSLFWSPTGRFIVLAGLKGFNGELEFFDVDELETMATTEHFMATDIEWDPSGRYVATAVTSVHEMENGLNIWTFHGKLLYRVLKDLFFQFAWRPRPPSLLSPEKEEEIVKNLKKYSKKYEAEDQDVSMLLSEQDREKRKMLKEEWKKWVNEWKRLHEDEKLLRQKLRDGEASDEEEEYEAKEVEVEEILDVSEEILSFDYVQE | 729 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 33430148 | 33433678 | + | Sed0010327.1 | Sed12g2347 | 733303 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2347 | 729 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 191 | 392 | - | - | |
Sed12g2347 | 729 | Pfam | Eukaryotic translation initiation factor eIF2A | 416 | 615 | IPR013979 | - | |
Sed12g2347 | 729 | CDD | RRM_eIF3B | 67 | 153 | IPR034363 | - | |
Sed12g2347 | 729 | Gene3D | - | 410 | 638 | IPR015943 | GO:0005515(InterPro) | |
Sed12g2347 | 729 | SUPERFAMILY | RNA-binding domain, RBD | 61 | 154 | IPR035979 | GO:0003676(InterPro) | |
Sed12g2347 | 729 | Gene3D | - | 185 | 392 | IPR015943 | GO:0005515(InterPro) | |
Sed12g2347 | 729 | SMART | rrm1_1 | 68 | 153 | IPR000504 | GO:0003723(InterPro) | |
Sed12g2347 | 729 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 63 | 164 | - | - | |
Sed12g2347 | 729 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 157 | IPR000504 | GO:0003723(InterPro) | |
Sed12g2347 | 729 | FunFam | Eukaryotic translation initiation factor 3 subunit B | 421 | 636 | - | - | |
Sed12g2347 | 729 | PIRSF | Transl_init_eIF3b | 8 | 723 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Sed12g2347 | 729 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 55 | 723 | IPR011400 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Sed12g2347 | 729 | SUPERFAMILY | DPP6 N-terminal domain-like | 227 | 610 | - | - | |
Sed12g2347 | 729 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 42 | 718 | IPR011400 | GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro) | |
Sed12g2347 | 729 | Pfam | RNA recognition motif | 104 | 147 | IPR000504 | GO:0003723(InterPro) | |
Sed12g2347 | 729 | Gene3D | - | 63 | 164 | IPR012677 | - | |
Sed12g2347 | 729 | Coils | Coil | 697 | 717 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0023 | Sed-Chr8:81324 | Sed12g2347 | Sed-Chr12:33430148 | 0.00E+00 | dispersed | |
Sed08g0024 | Sed-Chr8:81324 | Sed12g2347 | Sed-Chr12:33430148 | 0.00E+00 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2347 | K03253 | - | csv:101213144 | 1172.53 |