Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2369 ATGTCTAGCTGCATAGATATTGCTCCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGTCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCTTGGCAAGATGTTCAGGTTCCAAATTACAATATGTACCCTTCAAGTGGACCTGAATTTCAGGCTGATTTTGGCTCCTCATCCAAATGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTCCAGCAGAGGAAAGAGTTGTAAATCGACCTCCCGAGAAGAGGCAGAGAGTACCCTCTGCTTATAATCAGTTCATAAAAGAGGAAATTCAAAGGATTAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATAATCAAATGAAGCTAGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCACTATTAAACAAATGA 576 41.67 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNMYPSSGPEFQADFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQMKLDDGSERLMSRAALLNK 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33608023 33612492 + Sed0023872.1 Sed12g2369 733325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2369 191 CDD HMG-box_SF 118 154 - -
Sed12g2369 191 FunFam axial regulator YABBY 5-like 102 160 - -
Sed12g2369 191 SUPERFAMILY HMG-box 101 157 IPR036910 -
Sed12g2369 191 PANTHER PROTEIN YABBY 6-RELATED 9 174 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Sed12g2369 191 Gene3D High mobility group box domain 104 159 IPR036910 -
Sed12g2369 191 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1650 Sed-Chr6:41269917 Sed12g2369 Sed-Chr12:33608023 3.70E-07 dispersed
Sed08g0678 Sed-Chr8:4823206 Sed12g2369 Sed-Chr12:33608023 2.10E-90 dispersed
Sed11g0123 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 9.10E-59 dispersed
Sed11g0124 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 3.60E-69 dispersed
Sed10g1447 Sed-Chr10:30726743 Sed12g2369 Sed-Chr12:33608023 4.40E-70 wgd
Sed11g0122 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 6.90E-71 wgd
Sed12g2369 Sed-Chr12:33608023 Sed08g0677 Sed-Chr8:4823206 2.40E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40301 PF04690 YABBY 9.70E-70 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2369 K25796 - csv:101215951 356.681