Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2369 ATGTCTAGCTGCATAGATATTGCTCCTGAACAACTCTGCTACATCCCTTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGATATTGTGACAGTCCGATGTGGTCACTGCACAAATCTGTGGTCCGTGAATATGGCTGCTGCATTTCAGTCACTTTCTTGGCAAGATGTTCAGGTTCCAAATTACAATATGTACCCTTCAAGTGGACCTGAATTTCAGGCTGATTTTGGCTCCTCATCCAAATGTAACAATAATAAGATGGAAATTCGAGCACCCACTACAATTCCAGCAGAGGAAAGAGTTGTAAATCGACCTCCCGAGAAGAGGCAGAGAGTACCCTCTGCTTATAATCAGTTCATAAAAGAGGAAATTCAAAGGATTAAGGCAAATAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACAGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTCATGTTGGAAACCAACAATAATCAAATGAAGCTAGATGATGGTTCTGAGCGTTTAATGTCAAGGGCTGCACTATTAAACAAATGA 576 41.67 MSSCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQVPNYNMYPSSGPEFQADFGSSSKCNNNKMEIRAPTTIPAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNNQMKLDDGSERLMSRAALLNK 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33608023 33612492 + Sed0023872.1 Sed12g2369 733325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2369 191 CDD HMG-box_SF 118 154 - -
Sed12g2369 191 FunFam axial regulator YABBY 5-like 102 160 - -
Sed12g2369 191 SUPERFAMILY HMG-box 101 157 IPR036910 -
Sed12g2369 191 PANTHER PROTEIN YABBY 6-RELATED 9 174 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Sed12g2369 191 Gene3D High mobility group box domain 104 159 IPR036910 -
Sed12g2369 191 Pfam YABBY protein 8 164 IPR006780 GO:0007275(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2369 K25796 - - csv:101215951 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1650 Sed-Chr6:41269917 Sed12g2369 Sed-Chr12:33608023 3.70E-07 dispersed
Sed08g0678 Sed-Chr8:4823206 Sed12g2369 Sed-Chr12:33608023 2.10E-90 dispersed
Sed11g0123 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 9.10E-59 dispersed
Sed11g0124 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 3.60E-69 dispersed
Sed10g1447 Sed-Chr10:30726743 Sed12g2369 Sed-Chr12:33608023 4.40E-70 wgd
Sed11g0122 Sed-Chr11:1057656 Sed12g2369 Sed-Chr12:33608023 6.90E-71 wgd
Sed12g2369 Sed-Chr12:33608023 Sed08g0677 Sed-Chr8:4823206 2.40E-100 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g2037 . 1 182 C2C2-YABBY Transcription Factor Family AT1G69180 51.4 2.4e-44 176.4
Sed01g4021 . 62 220 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed01g4022 . 1 159 C2C2-YABBY Transcription Factor Family AT2G45190 59.1 1.2e-42 170.6
Sed05g0986 . 69 234 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 2.9e-41 166.0
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 68.8 2.1e-56 216.5
Sed01g4021 . 18 210 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.1e-44 174.5
Sed12g2369 . 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 2.0e-43 173.3
Sed08g0677 . 6 179 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 2.9e-42 169.5
Sed05g0986 . 25 224 C2C2-YABBY Transcription Factor Family AT1G08465 50.5 5.0e-42 168.7
Sed08g0678 . 6 164 C2C2-YABBY Transcription Factor Family AT1G08465 54.9 1.1e-41 167.5
Sed11g0122 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed11g0124 . 5 179 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.5e-41 166.4
Sed10g1447 . 8 177 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 3.2e-41 166.0
Sed01g4021 . 29 219 C2C2-YABBY Transcription Factor Family AT4G00180 56.9 6.7e-51 198.4
Sed05g0986 . 36 233 C2C2-YABBY Transcription Factor Family AT4G00180 53.7 5.3e-48 188.7
Sed01g4022 . 1 158 C2C2-YABBY Transcription Factor Family AT4G00180 54.7 1.4e-37 154.1
Sed04g0622 . 1 171 C2C2-YABBY Transcription Factor Family AT1G23420 51.4 1.3e-40 164.5
Sed08g0677 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 71.4 3.9e-62 235.3
Sed08g0678 . 8 160 C2C2-YABBY Transcription Factor Family AT2G26580 74.8 8.7e-62 234.2
Sed12g2369 . 7 169 C2C2-YABBY Transcription Factor Family AT2G26580 73.0 1.1e-61 233.8
Sed11g0122 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed11g0124 . 9 170 C2C2-YABBY Transcription Factor Family AT2G26580 72.2 3.3e-61 232.3
Sed10g1447 . 10 168 C2C2-YABBY Transcription Factor Family AT2G26580 73.8 1.3e-60 230.3
Sed11g0123 . 4 147 C2C2-YABBY Transcription Factor Family AT2G26580 70.8 4.0e-51 198.7
Sed01g3224 . 1 169 C2C2-YABBY Transcription Factor Family AT2G26580 60.9 3.2e-48 189.1
Sed01g4021 . 20 182 C2C2-YABBY Transcription Factor Family AT2G26580 55.0 1.1e-43 174.1
Sed05g0986 . 25 197 C2C2-YABBY Transcription Factor Family AT2G26580 54.3 1.4e-43 173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40301 PF04690 YABBY 9.70E-70 CL0114 Sed TF