Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2379 ATGGCTAAGCTTAAGAAGTTCAGAGGTGTTAGGCAGCGCCATTGGGGTTCTTGGGTGTCCGAAATTCGCCATCCTTTACTGAAGAAGAGGATATGGTTGGGGACGTTCGACACGGCGGAGGAAGCAGCGAGCGCGTACGATCAAGCTGCGATTTTGATGAGCGGTCGAAACGCCAAAACCAACTTCCCTGTCGCCCAACCTCCCAACATTACAACCAAGGATCCCCCAAAGGGCTTGGCTGAAATATTGCAGGCTAAGCTCAAGAAATGCTGTAGAACTCCATCGCCCTCGATGACATGCTTGAGGCTCGACACCGAGAACTCGAACATTGGCGTGTGGCAGAAGCGCGCCGGGCAGCAGTCCGCGTCCAATTGGGTCATGACGGTTGAGCTTGGAAACAAGAGAAGCCACGACAATGATAGTACTGATTCTCTCTTGGCAGCTGGGGTTGGTACCGATCACGATCCGTCACGGGCGGCGGCGAGCGTGTCGGAGATTCAATCAGAGTTGGATGAAGAAGAGAGAATGGTGGCATTGCAGATGGTGGAGGAACTACTTCACATTAACTATGATGATCCCAACGAACTGTTTGAGATTCAAGAGGATAAGTATGTTAATCTATAG 624 51.28 MAKLKKFRGVRQRHWGSWVSEIRHPLLKKRIWLGTFDTAEEAASAYDQAAILMSGRNAKTNFPVAQPPNITTKDPPKGLAEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQQSASNWVMTVELGNKRSHDNDSTDSLLAAGVGTDHDPSRAAASVSEIQSELDEEERMVALQMVEELLHINYDDPNELFEIQEDKYVNL 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33682091 33683097 + Sed0015075.1 Sed12g2379 733335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2379 207 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 128 IPR050913 -
Sed12g2379 207 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Sed12g2379 207 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g2379 207 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Sed12g2379 207 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2379 Sed-Chr12:33682091 Sed13g2026 Sed-Chr13:25166544 3.70E-54 dispersed
Sed10g1443 Sed-Chr10:30652516 Sed12g2379 Sed-Chr12:33682091 8.70E-60 wgd
Sed12g2379 Sed-Chr12:33682091 Sed06g2113 Sed-Chr6:45041480 6.20E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40302 PF00847 AP2 2.20E-12 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2379 - - - 0.0