Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2379 | ATGGCTAAGCTTAAGAAGTTCAGAGGTGTTAGGCAGCGCCATTGGGGTTCTTGGGTGTCCGAAATTCGCCATCCTTTACTGAAGAAGAGGATATGGTTGGGGACGTTCGACACGGCGGAGGAAGCAGCGAGCGCGTACGATCAAGCTGCGATTTTGATGAGCGGTCGAAACGCCAAAACCAACTTCCCTGTCGCCCAACCTCCCAACATTACAACCAAGGATCCCCCAAAGGGCTTGGCTGAAATATTGCAGGCTAAGCTCAAGAAATGCTGTAGAACTCCATCGCCCTCGATGACATGCTTGAGGCTCGACACCGAGAACTCGAACATTGGCGTGTGGCAGAAGCGCGCCGGGCAGCAGTCCGCGTCCAATTGGGTCATGACGGTTGAGCTTGGAAACAAGAGAAGCCACGACAATGATAGTACTGATTCTCTCTTGGCAGCTGGGGTTGGTACCGATCACGATCCGTCACGGGCGGCGGCGAGCGTGTCGGAGATTCAATCAGAGTTGGATGAAGAAGAGAGAATGGTGGCATTGCAGATGGTGGAGGAACTACTTCACATTAACTATGATGATCCCAACGAACTGTTTGAGATTCAAGAGGATAAGTATGTTAATCTATAG | 624 | 51.28 | MAKLKKFRGVRQRHWGSWVSEIRHPLLKKRIWLGTFDTAEEAASAYDQAAILMSGRNAKTNFPVAQPPNITTKDPPKGLAEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQQSASNWVMTVELGNKRSHDNDSTDSLLAAGVGTDHDPSRAAASVSEIQSELDEEERMVALQMVEELLHINYDDPNELFEIQEDKYVNL | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 33682091 | 33683097 | + | Sed0015075.1 | Sed12g2379 | 733335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2379 | 207 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 128 | IPR050913 | - | |
Sed12g2379 | 207 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) | |
Sed12g2379 | 207 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | Pfam | AP2 domain | 6 | 53 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g2379 | 207 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Sed12g2379 | 207 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g2379 | Sed-Chr12:33682091 | Sed13g2026 | Sed-Chr13:25166544 | 3.70E-54 | dispersed | |
Sed10g1443 | Sed-Chr10:30652516 | Sed12g2379 | Sed-Chr12:33682091 | 8.70E-60 | wgd | |
Sed12g2379 | Sed-Chr12:33682091 | Sed06g2113 | Sed-Chr6:45041480 | 6.20E-25 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40302 | PF00847 | AP2 | 2.20E-12 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2379 | - | - | - | 0.0 |