Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2380 ATGAGGCAAATAAAAGCCATTTGGTGGATTTTTGTGGGAATTGTAGCAATTGTTTTCCCAGTAAAAAGTGAGCTAACTGTTGGATACTATTCAAGAACATGTCCCAAGGCCGAGTCCATTGTCAGGTCTACGGTCGAGTCACATTTGAAAGCCGACCCCACCCTTGCAGCGGGCTTGCTCAGGCTTCACTTTCACGATTGTTTTGTTCAGGGGTGCGATGGGTCGGTGTTGATTATGAACGAAGAAGCAGAAATAAATGCGGGGCCGAACATGGGGTTAAGAGGGTTTGAAATAGTCGACGATGCGAAATCGCAGCTCGAAAATTTGTGCCCCGGTGTGGTTTCTTGTGCTGATATACTTGCTTTGGCTACTCGTGATGCTGTTGACTTGAGTGAAGGTCCAAGTTGGTCGGTGCCGACGGGACGAAAGGATGGGAAAGTTTCTATAAGTTCCCAAGCCGAAGATCTACCTTCTCCATTCGAGCCCATCAATGTTCACATACAAAAGTTTGCAGAGAAAGGCCTAACTGTCGAAGATCTTGTAACCCTAGTTGGGGCTCACACAATTGGGCGAACAGATTGCCAACTATTCAGCTACCGTTTGCAAAACTTCACAAGCTTAGGCCATCCAGACCCAACCATAAACCCCTCATTCTTGACACAGCTTAGAGACCTATGCCCTTTGGATGGGGATCCCTTCAAAGGAGTGGCCATGGACAAGGACAGCCCCTTGAAATTTGACAACAGCTTCTTCAAGAACTTGATCGATGGCAACGGCGTCTTGGAGTCGGACCAGCGGCTCTGGAACCACCGAGCGACTCGAGGCGTCGTGCAGAACTATGCTGGGTCCTTGAGGGGCTTGCTGGGCCTTAGGTTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGCAGCCTTGATGTCAAGACTGGGGATCAAGGGGAGATTAGAAATGTGTGTTTTCAATTTAATAAGCAAAAATGA 984 47.46 MRQIKAIWWIFVGIVAIVFPVKSELTVGYYSRTCPKAESIVRSTVESHLKADPTLAAGLLRLHFHDCFVQGCDGSVLIMNEEAEINAGPNMGLRGFEIVDDAKSQLENLCPGVVSCADILALATRDAVDLSEGPSWSVPTGRKDGKVSISSQAEDLPSPFEPINVHIQKFAEKGLTVEDLVTLVGAHTIGRTDCQLFSYRLQNFTSLGHPDPTINPSFLTQLRDLCPLDGDPFKGVAMDKDSPLKFDNSFFKNLIDGNGVLESDQRLWNHRATRGVVQNYAGSLRGLLGLRFNYEFKKAMVKLSSLDVKTGDQGEIRNVCFQFNKQK 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33687557 33691006 + Sed0001588.1 Sed12g2380 733336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2380 327 Gene3D - 28 324 - -
Sed12g2380 327 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed12g2380 327 PANTHER PEROXIDASE 25-RELATED 19 320 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed12g2380 327 FunFam Peroxidase 28 167 - -
Sed12g2380 327 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Sed12g2380 327 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed12g2380 327 Gene3D Peroxidase, domain 2 157 303 - -
Sed12g2380 327 Pfam Peroxidase 41 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed12g2380 327 FunFam Peroxidase 157 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1834 Sed-Chr10:35367093 Sed12g2380 Sed-Chr12:33687557 7.40E-105 dispersed
Sed10g1835 Sed-Chr10:35372213 Sed12g2380 Sed-Chr12:33687557 1.10E-89 dispersed
Sed12g2380 Sed-Chr12:33687557 Sed14g1212 Sed-Chr14:21362100 1.60E-67 dispersed
Sed12g2380 Sed-Chr12:33687557 Sed10g1818 Sed-Chr10:35254808 5.50E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2380 K00430 - csv:101214998 552.362