Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2385 ATGAAAGAGGAAGTGCAATTGGTATCGTTAATTGAGCAAAACCCTACTGATTCTGATCCCCTGCTTGAGAATCAGCCCGATTCTTCGTCCCATGGTGGAACCTCCGATGAAATCAAGGATGACGATGACGATGATGATGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCTGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTTCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAGGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCATATTGGAGGACACCTCTTGGCGTAAACTTAAATTCAGGCTTTTCGTGGCAAGGGATGTTATCCTTGTATTTCTAGCTGTACAAACTTTAATAGCTGCAATGGGTGGTTATGCATATATTATGGACAAAGACGGGTCGTTCAGGAATTCTTTCAGTGATGGATGGGATCGTATTTTGTCCAAACATCCTATTCCATTTTATTACTGTATTGGGGTTTTGGCCTTCTTTGTTCTGCTTGGATTTTTCGGGATCATACTACATTGTTCCTCCCTGAATAGTAACGATCCGCGAGTTGCGGGGTGTCACAACTGTTGCTATGGATGGGGTATTTTGGATTGTTTCCCTGCCTCTATGGAGGCCTGCTTTGCACTTGTCATCGTTTTCGTCGTTATCTTTGTAATCCTTGGCATAGCTTATGGCTTCCTTGCTGCTACTATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACCAAAAGGGAGCTGACTAAAGAATACGTGGTGGAGGATCTTCACGGTTGTTATACCCCTCCAAAATTGGATCCCGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 936 43.59 MKEEVQLVSLIEQNPTDSDPLLENQPDSSSHGGTSDEIKDDDDDDDDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSILEDTSWRKLKFRLFVARDVILVFLAVQTLIAAMGGYAYIMDKDGSFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGIILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLDPEHEQHLKMLQLL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33719826 33723570 + Sed0024294.1 Sed12g2385 733341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2385 311 SMART ringv_2 55 107 IPR011016 GO:0008270(InterPro)
Sed12g2385 311 CDD RING_CH-C4HC3_MARCH 56 107 - -
Sed12g2385 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 120 IPR013083 -
Sed12g2385 311 MobiDBLite consensus disorder prediction 1 49 - -
Sed12g2385 311 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 12 310 - -
Sed12g2385 311 ProSiteProfiles Zinc finger RING-CH-type profile. 48 113 IPR011016 GO:0008270(InterPro)
Sed12g2385 311 SUPERFAMILY RING/U-box 54 111 - -
Sed12g2385 311 MobiDBLite consensus disorder prediction 9 32 - -
Sed12g2385 311 Pfam RING-variant domain 56 106 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0010 Sed-Chr6:104718 Sed12g2385 Sed-Chr12:33719826 8.10E-10 dispersed
Sed10g0883 Sed-Chr10:6657289 Sed12g2385 Sed-Chr12:33719826 4.10E-55 dispersed
Sed12g2385 Sed-Chr12:33719826 Sed14g1078 Sed-Chr14:20290848 1.90E-54 dispersed
Sed12g2385 Sed-Chr12:33719826 Sed12g2386 Sed-Chr12:33719826 3.20E-174 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2385 - - - 0.0