Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2387 ATGGAAGGCGTTAGAAACAGAGGGGGTTTCGGAGTTTCCGTTTGCGGCCAAGAAGAGCTCGAGCAAATTTCTAGAGATGGCAGTCAGTACAGCTTGACCACCGGAATATTGCCGTCGCTCGGCGCTCGGAGCAACCGGCGAGTTAAGCTCCGGCAATTCATCATTTCGCCATATGATCGTCGTTACAGGGTTTGGGAGACATTTTTGGTTATTTTGGTTGCTTATACGGCATGGGTCTCGCCGTTCGAGTTTGGATTCCTCATGAAACCTCAATGGCCACTCTCAATTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTATCCTCACGTTCTTTGTAGCTTATCTCGATACAGCCGCCTATTTACTTGTCGATGAACCGAAGAAGATTGCTCTAAAGTATGCTAGGACATGGCTCATCTTTGATGTCATATCTACAATTCCCTCTGAACTTGTACATAAGATTTCCTCAACAACACTTAGTTCTTATGGATTCTTCAATATGCTTCGTCTGTGGCGTCTCAGAAGAGTCAGTGCTCTCTTTTCCAGACTTGAAAAGGATAGGAACTACAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTTATTGCCGCTCGTTATCATGACCCGAAAAGGACTTGGATTGGAGCATCTATGGAAAACTTTCTTGAGCAAAGTTTGGGGCTTAGATATATCACATCCATTTATTGGTCCATCACTACCCTAACCACTGTCGGCTATGGCGACTTGCATCCAGTAAATACAGGGGAGATGATTTTTGACATTTTCTACATGCTTTTCAATCTTGGTTTGACCGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACTAGTAGAACTAGAAAATTTAGAGATACCATACAAGCGGCTTCAAGTTTTTCCCATAGGAATCAACTTCCTCCTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTTCGAACTGACTCTGAAGGATTGCAGCAGCAGGAAACTCTCGACTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGCTTACTTGTTTCATGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGATTTCTACATCCTTGTCACCGGTGCTGTGGATTTGCTGGTGCTCAAGAATGGAGTTGAAAATGTTGTTGGGGAGGCTAAAACCGGCGAGCTTTGTGGTGAGGTTGGGGTGTTATGTTACAGGCCACAACTATTTACCGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGTTTTCCTGAATATTGTTCAATCTAATGTTGGAGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAAGACCAAAAAGACAAGGACCCCATCATGGAAGGTGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAACTTTTGAAACGGGGTCTCGATCCAAACGAATCCGACACCAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAATGAGAACTGTGTGCTTCTCTTGCTAGACTATGAAGCCGATCCCAATTGCAGAGATTCTGATGGGAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCACGAGCCGATAGTTCAGCTACTTAAAGACAATGGTGCTAATCTCCAACTGGGAGATGTCGGTCACTTTGCGTGTACTGCTGCAGAGAAAAACAACCTCCCATTGCTTAAGGAGATCGTCCGATACGGAGGAGACGTTACGAGTGTCAAGGACAATGGAACAACAGCCTTACATGTTGCTGTTTGTGAAGAGAACATAGAGATTGTCAAGTTTCTTCTTAAACAGGGAGCTGACATAGACAAACCAGGTGTCGATGGATGGACACCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATAAAAAACCTCTTCCAGACAACGAAAGAGGCAAAGACTCAATCTGTCGTTGCTATTCCCGAGAAGCAGACTGGTGTTCCCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCTCTACCTCAGGAAGGAAATGATGGTTCACGGCACGGTGAATCTCGCCCCCGACGTAGGACTAATAACTTCAACAACTCATTATTTGGTATCATGTCAGCAACACACTCAGACGAGAAAGATACTCTTTTCCACGATAACCAAACCAGAAGAGAGAACTCTCAAACCAACCCAGCAAGGGTAATAATCAGCTGTTCGAAGATCGGCAAAGCTTCCAGGAAGTTGGTGCTGCTTCCGGGAAGCTTCAACGAGTTACTCGAGATTGGAGCCAAGAAATTTGGGATTATAGTTTTGAAGGTATTGAATGAAGATGATGAGGCTGCTATAGAAGATATAGAGGTCATTAGAGATGGTGATCATCTTATTTTTGTTAGCGATGAACAAACCACATAA 2625 43.81 MEGVRNRGGFGVSVCGQEELEQISRDGSQYSLTTGILPSLGARSNRRVKLRQFIISPYDRRYRVWETFLVILVAYTAWVSPFEFGFLMKPQWPLSITDNVVNGFFAVDIILTFFVAYLDTAAYLLVDEPKKIALKYARTWLIFDVISTIPSELVHKISSTTLSSYGFFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLGLRYITSIYWSITTLTTVGYGDLHPVNTGEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKAYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVENVVGEAKTGELCGEVGVLCYRPQLFTVRTKRLSQLLRLNRTVFLNIVQSNVGDGTIIMNNLLQHLKDQKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDTNGRTSLHIAASKGNENCVLLLLDYEADPNCRDSDGSVPLWEAILGGHEPIVQLLKDNGANLQLGDVGHFACTAAEKNNLPLLKEIVRYGGDVTSVKDNGTTALHVAVCEENIEIVKFLLKQGADIDKPGVDGWTPRDLADQQGHEEIKNLFQTTKEAKTQSVVAIPEKQTGVPFLGRFTSEPMIRPLPQEGNDGSRHGESRPRRRTNNFNNSLFGIMSATHSDEKDTLFHDNQTRRENSQTNPARVIISCSKIGKASRKLVLLPGSFNELLEIGAKKFGIIVLKVLNEDDEAAIEDIEVIRDGDHLIFVSDEQTT 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33723683 33729611 - Sed0001092.1 Sed12g2387 733343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2387 874 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Sed12g2387 874 FunFam Potassium channel SKOR 63 301 - -
Sed12g2387 874 PANTHER POTASSIUM CHANNEL AKT1 22 866 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed12g2387 874 ProSiteProfiles KHA domain profile. 804 874 IPR021789 -
Sed12g2387 874 MobiDBLite consensus disorder prediction 741 769 - -
Sed12g2387 874 Gene3D - 63 301 - -
Sed12g2387 874 ProSiteProfiles Ankyrin repeat region circular profile. 657 685 - -
Sed12g2387 874 SMART ANK_2a 657 686 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 SMART ANK_2a 593 622 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 SMART ANK_2a 527 556 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 SMART ANK_2a 560 589 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 Gene3D Jelly Rolls 344 507 IPR014710 -
Sed12g2387 874 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Sed12g2387 874 SUPERFAMILY Ankyrin repeat 532 711 IPR036770 -
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2387 874 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 CDD CAP_ED 380 485 IPR000595 -
Sed12g2387 874 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 Pfam Ankyrin repeats (3 copies) 631 707 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 Pfam Ankyrin repeats (3 copies) 532 622 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 SMART cnmp_10 380 497 IPR000595 -
Sed12g2387 874 Gene3D - 528 712 IPR036770 -
Sed12g2387 874 Pfam KHA, dimerisation domain of potassium ion channel 804 867 IPR021789 -
Sed12g2387 874 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Sed12g2387 874 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g2387 874 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515(InterPro)
Sed12g2387 874 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Sed12g2387 874 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Sed12g2387 874 FunFam Potassium channel KAT2 368 504 - -
Sed12g2387 874 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3013 Sed-Chr1:31888211 Sed12g2387 Sed-Chr12:33723683 3.80E-89 dispersed
Sed03g0864 Sed-Chr3:5264391 Sed12g2387 Sed-Chr12:33723683 1.50E-85 dispersed
Sed04g1605 Sed-Chr4:30794336 Sed12g2387 Sed-Chr12:33723683 1.70E-129 dispersed
Sed05g1681 Sed-Chr5:30609943 Sed12g2387 Sed-Chr12:33723683 2.90E-284 dispersed
Sed12g2387 Sed-Chr12:33723683 Sed13g0533 Sed-Chr13:3669303 4.80E-135 dispersed
Sed12g2387 Sed-Chr12:33723683 Sed12g2388 Sed-Chr12:33723683 0.00E+00 tandem
Sed01g2217 Sed-Chr1:16615767 Sed12g2387 Sed-Chr12:33723683 1.90E-06 transposed
Sed05g1662 Sed-Chr5:30491060 Sed12g2387 Sed-Chr12:33723683 4.00E-139 transposed
Sed12g2387 Sed-Chr12:33723683 Sed08g0702 Sed-Chr8:5101328 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2387 K21867 - csv:101220784 1527.3