Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2388 | ATGGAAGGCGTTAGAAACAGAGGGGGTTTCGGAGTTTCCGTTTGCGGCCAAGAAGAGCTCGAGCAAATTTCTAGAGATGGCAGTCAGTACAGCTTGACCACCGGAATATTGCCGTCGCTCGGCGCTCGGAGCAACCGGCGAGTTAAGCTCCGGCAATTCATCATTTCGCCATATGATCGTCGTTACAGGGTTTGGGAGACATTTTTGGTTATTTTGGTTGCTTATACGGCATGGGTCTCGCCGTTCGAGTTTGGATTCCTCATGAAACCTCAATGGCCACTCTCAATTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTATCCTCACGTTCTTTGTAGCTTATCTCGATACAGCCGCCTATTTACTTGTCGATGAACCGAAGAAGATTGCTCTAAAGTATGCTAGGACATGGCTCATCTTTGATGTCATATCTACAATTCCCTCTGAACTTGTACATAAGATTTCCTCAACAACACTTAGTTCTTATGGATTCTTCAATATGCTTCGTCTGTGGCGTCTCAGAAGAGTCAGTGCTCTCTTTTCCAGGTGCAAAAGACTTTTATCTACGCATGTATTAGTCGGATCAAACATTGAGTTAATTTTCATTTCCTTTCTTTGGAACAGACTTGAAAAGGATAGGAACTACAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTTATTGCCGCTCGTTATCATGACCCGAAAAGGACTTGGATTGGAGCATCTATGGAAAACTTTCTTGAGCAAAGTTTGGGGCTTAGATATATCACATCCATTTATTGGTCCATCACTACCCTAACCACTGTCGGCTATGGCGACTTGCATCCAGTAAATACAGGGGAGATGATTTTTGACATTTTCTACATGCTTTTCAATCTTGGTTTGACCGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACTAGTAGAACTAGAAAATTTAGAGATACCATACAAGCGGCTTCAAGTTTTTCCCATAGGAATCAACTTCCTCCTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTTCGAACTGACTCTGAAGGATTGCAGCAGCAGGAAACTCTCGACTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGCTTACTTGTTTCATGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGATTTCTACATCCTTGTCACCGGTGCTGTGGATTTGCTGGTGCTCAAGAATGGAGTTGAAAATGTTGTTGGGGAGGCTAAAACCGGCGAGCTTTGTGGTGAGGTTGGGGTGTTATGTTACAGGCCACAACTATTTACCGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGTTTTCCTGAATATTGTTCAATCTAATGTTGGAGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAAGACCAAAAAGACAAGGACCCCATCATGGAAGGTGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAACTTTTGAAACGGGGTCTCGATCCAAACGAATCCGACACCAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAATGAGAACTGTGTGCTTCTCTTGCTAGACTATGAAGCCGATCCCAATTGCAGAGATTCTGATGGGAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCACGAGCCGATAGTTCAGCTACTTAAAGACAATGGTGCTAATCTCCAACTGGGAGATGTCGGTCACTTTGCGTGTACTGCTGCAGAGAAAAACAACCTCCCATTGCTTAAGGAGATCGTCCGATACGGAGGAGACGTTACGAGTGTCAAGGACAATGGAACAACAGCCTTACATGTTGCTGTTTGTGAAGAGAACATAGAGATTGTCAAGTTTCTTCTTAAACAGGGAGCTGACATAGACAAACCAGGTGTCGATGGATGGACACCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATAAAAAACCTCTTCCAGACAACGAAAGAGGCAAAGACTCAATCTGTCGTTGCTATTCCCGAGAAGCAGACTGGTGTTCCCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCTCTACCTCAGGAAGGAAATGATGGTTCACGGCACGGTGAATCTCGCCCCCGACGTAGGACTAATAACTTCAACAACTCATTATTTGGTATCATGTCAGCAACACACTCAGACGAGAAAGATACTCTTTTCCACGATAACCAAACCAGAAGAGAGAACTCTCAAACCAACCCAGCAAGGGTAATAATCAGCTGTTCGAAGATCGGCAAAGCTTCCAGGAAGTTGGTGCTGCTTCCGGGAAGCTTCAACGAGTTACTCGAGATTGGAGCCAAGAAATTTGGGATTATAGTTTTGAAGGTATTGAATGAAGATGATGAGGCTGCTATAGAAGATATAGAGGTCATTAGAGATGGTGATCATCTTATTTTTGTTAGCGATGAACAAACCACATAA | 2703 | 43.51 | MEGVRNRGGFGVSVCGQEELEQISRDGSQYSLTTGILPSLGARSNRRVKLRQFIISPYDRRYRVWETFLVILVAYTAWVSPFEFGFLMKPQWPLSITDNVVNGFFAVDIILTFFVAYLDTAAYLLVDEPKKIALKYARTWLIFDVISTIPSELVHKISSTTLSSYGFFNMLRLWRLRRVSALFSRCKRLLSTHVLVGSNIELIFISFLWNRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLGLRYITSIYWSITTLTTVGYGDLHPVNTGEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKAYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVENVVGEAKTGELCGEVGVLCYRPQLFTVRTKRLSQLLRLNRTVFLNIVQSNVGDGTIIMNNLLQHLKDQKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDTNGRTSLHIAASKGNENCVLLLLDYEADPNCRDSDGSVPLWEAILGGHEPIVQLLKDNGANLQLGDVGHFACTAAEKNNLPLLKEIVRYGGDVTSVKDNGTTALHVAVCEENIEIVKFLLKQGADIDKPGVDGWTPRDLADQQGHEEIKNLFQTTKEAKTQSVVAIPEKQTGVPFLGRFTSEPMIRPLPQEGNDGSRHGESRPRRRTNNFNNSLFGIMSATHSDEKDTLFHDNQTRRENSQTNPARVIISCSKIGKASRKLVLLPGSFNELLEIGAKKFGIIVLKVLNEDDEAAIEDIEVIRDGDHLIFVSDEQTT | 900 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 33723683 | 33729611 | - | Sed0001092.2 | Sed12g2388 | 733344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2388 | 900 | Pfam | Ion transport protein | 208 | 333 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed12g2388 | 900 | Pfam | Ion transport protein | 62 | 203 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Sed12g2388 | 900 | PRINTS | Ankyrin repeat signature | 587 | 602 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | PRINTS | Ankyrin repeat signature | 699 | 713 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | SUPERFAMILY | cAMP-binding domain-like | 331 | 526 | IPR018490 | - | |
| Sed12g2388 | 900 | SUPERFAMILY | Voltage-gated potassium channels | 57 | 326 | - | - | |
| Sed12g2388 | 900 | SMART | ANK_2a | 553 | 582 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | SMART | ANK_2a | 619 | 648 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | SMART | ANK_2a | 650 | 679 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | SMART | ANK_2a | 586 | 615 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | SMART | ANK_2a | 683 | 712 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | Gene3D | Jelly Rolls | 370 | 533 | IPR014710 | - | |
| Sed12g2388 | 900 | ProSiteProfiles | KHA domain profile. | 830 | 900 | IPR021789 | - | |
| Sed12g2388 | 900 | SUPERFAMILY | Ankyrin repeat | 558 | 737 | IPR036770 | - | |
| Sed12g2388 | 900 | Gene3D | - | 63 | 327 | - | - | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 109 | 118 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 318 | 327 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 291 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 75 | 82 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 98 | 108 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | PRINTS | EAG/ELK/ERG potassium channel family signature | 300 | 311 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat region circular profile. | 586 | 617 | - | - | |
| Sed12g2388 | 900 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 406 | 508 | IPR000595 | - | |
| Sed12g2388 | 900 | Pfam | KHA, dimerisation domain of potassium ion channel | 830 | 893 | IPR021789 | - | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat profile. | 619 | 651 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | Gene3D | - | 554 | 738 | IPR036770 | - | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat profile. | 683 | 715 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | Pfam | Cyclic nucleotide-binding domain | 425 | 511 | IPR000595 | - | |
| Sed12g2388 | 900 | CDD | CAP_ED | 406 | 511 | IPR000595 | - | |
| Sed12g2388 | 900 | SMART | cnmp_10 | 406 | 523 | IPR000595 | - | |
| Sed12g2388 | 900 | Pfam | Ankyrin repeats (3 copies) | 657 | 733 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | Pfam | Ankyrin repeats (3 copies) | 558 | 648 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat region circular profile. | 619 | 650 | - | - | |
| Sed12g2388 | 900 | PANTHER | POTASSIUM CHANNEL AKT1 | 22 | 892 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat region circular profile. | 683 | 711 | - | - | |
| Sed12g2388 | 900 | ProSiteProfiles | Ankyrin repeat profile. | 586 | 618 | IPR002110 | GO:0005515(InterPro) | |
| Sed12g2388 | 900 | MobiDBLite | consensus disorder prediction | 767 | 795 | - | - | |
| Sed12g2388 | 900 | FunFam | Potassium channel KAT2 | 394 | 530 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2217 | Sed-Chr1:16615767 | Sed12g2388 | Sed-Chr12:33723683 | 1.90E-06 | dispersed | |
| Sed08g0702 | Sed-Chr8:5101328 | Sed12g2388 | Sed-Chr12:33723683 | 0.00E+00 | dispersed | |
| Sed12g2388 | Sed-Chr12:33723683 | Sed13g0533 | Sed-Chr13:3669303 | 6.30E-130 | dispersed | |
| Sed12g2387 | Sed-Chr12:33723683 | Sed12g2388 | Sed-Chr12:33723683 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2388 | K21867 | - | csv:101220784 | 1513.05 |