Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2388 ATGGAAGGCGTTAGAAACAGAGGGGGTTTCGGAGTTTCCGTTTGCGGCCAAGAAGAGCTCGAGCAAATTTCTAGAGATGGCAGTCAGTACAGCTTGACCACCGGAATATTGCCGTCGCTCGGCGCTCGGAGCAACCGGCGAGTTAAGCTCCGGCAATTCATCATTTCGCCATATGATCGTCGTTACAGGGTTTGGGAGACATTTTTGGTTATTTTGGTTGCTTATACGGCATGGGTCTCGCCGTTCGAGTTTGGATTCCTCATGAAACCTCAATGGCCACTCTCAATTACAGACAATGTGGTTAATGGGTTTTTTGCTGTGGATATTATCCTCACGTTCTTTGTAGCTTATCTCGATACAGCCGCCTATTTACTTGTCGATGAACCGAAGAAGATTGCTCTAAAGTATGCTAGGACATGGCTCATCTTTGATGTCATATCTACAATTCCCTCTGAACTTGTACATAAGATTTCCTCAACAACACTTAGTTCTTATGGATTCTTCAATATGCTTCGTCTGTGGCGTCTCAGAAGAGTCAGTGCTCTCTTTTCCAGGTGCAAAAGACTTTTATCTACGCATGTATTAGTCGGATCAAACATTGAGTTAATTTTCATTTCCTTTCTTTGGAACAGACTTGAAAAGGATAGGAACTACAACTACTTTTGGGTTCGATGTGCGAAACTCATTTGTGTTACTCTCTTTGCGGTTCACTGTGCTGCATGCTTCTATTATCTTATTGCCGCTCGTTATCATGACCCGAAAAGGACTTGGATTGGAGCATCTATGGAAAACTTTCTTGAGCAAAGTTTGGGGCTTAGATATATCACATCCATTTATTGGTCCATCACTACCCTAACCACTGTCGGCTATGGCGACTTGCATCCAGTAAATACAGGGGAGATGATTTTTGACATTTTCTACATGCTTTTCAATCTTGGTTTGACCGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACTAGTAGAACTAGAAAATTTAGAGATACCATACAAGCGGCTTCAAGTTTTTCCCATAGGAATCAACTTCCTCCTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTTCGAACTGACTCTGAAGGATTGCAGCAGCAGGAAACTCTCGACTCCTTGCCGAAAGCCATCCGATCAAGCATTTCACATTATCTTTTCTATTCTCTAGTGGACAAGGCTTACTTGTTTCATGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAGTATTTTCCTCCAAAAGAAGATGTGATTTTACAAAATGAAGCCCCAACAGATTTCTACATCCTTGTCACCGGTGCTGTGGATTTGCTGGTGCTCAAGAATGGAGTTGAAAATGTTGTTGGGGAGGCTAAAACCGGCGAGCTTTGTGGTGAGGTTGGGGTGTTATGTTACAGGCCACAACTATTTACCGTGCGCACGAAGCGATTGAGTCAGTTGCTGCGTCTGAATCGTACTGTTTTCCTGAATATTGTTCAATCTAATGTTGGAGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAAGACCAAAAAGACAAGGACCCCATCATGGAAGGTGTTTTGTTGGAGACAGAGAACATGCTAGCTAGAGGCAGAATGGACCTACCACTCAGTCTTTGTTTTGCAACACTTAGAGGAGATGACTTGCTTTTACACCAACTTTTGAAACGGGGTCTCGATCCAAACGAATCCGACACCAACGGGAGGACTTCACTTCATATAGCAGCATCAAAAGGAAATGAGAACTGTGTGCTTCTCTTGCTAGACTATGAAGCCGATCCCAATTGCAGAGATTCTGATGGGAGTGTGCCATTGTGGGAGGCGATACTAGGTGGCCACGAGCCGATAGTTCAGCTACTTAAAGACAATGGTGCTAATCTCCAACTGGGAGATGTCGGTCACTTTGCGTGTACTGCTGCAGAGAAAAACAACCTCCCATTGCTTAAGGAGATCGTCCGATACGGAGGAGACGTTACGAGTGTCAAGGACAATGGAACAACAGCCTTACATGTTGCTGTTTGTGAAGAGAACATAGAGATTGTCAAGTTTCTTCTTAAACAGGGAGCTGACATAGACAAACCAGGTGTCGATGGATGGACACCAAGAGATCTAGCAGACCAACAGGGACATGAAGAAATAAAAAACCTCTTCCAGACAACGAAAGAGGCAAAGACTCAATCTGTCGTTGCTATTCCCGAGAAGCAGACTGGTGTTCCCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGCCCTCTACCTCAGGAAGGAAATGATGGTTCACGGCACGGTGAATCTCGCCCCCGACGTAGGACTAATAACTTCAACAACTCATTATTTGGTATCATGTCAGCAACACACTCAGACGAGAAAGATACTCTTTTCCACGATAACCAAACCAGAAGAGAGAACTCTCAAACCAACCCAGCAAGGGTAATAATCAGCTGTTCGAAGATCGGCAAAGCTTCCAGGAAGTTGGTGCTGCTTCCGGGAAGCTTCAACGAGTTACTCGAGATTGGAGCCAAGAAATTTGGGATTATAGTTTTGAAGGTATTGAATGAAGATGATGAGGCTGCTATAGAAGATATAGAGGTCATTAGAGATGGTGATCATCTTATTTTTGTTAGCGATGAACAAACCACATAA 2703 43.51 MEGVRNRGGFGVSVCGQEELEQISRDGSQYSLTTGILPSLGARSNRRVKLRQFIISPYDRRYRVWETFLVILVAYTAWVSPFEFGFLMKPQWPLSITDNVVNGFFAVDIILTFFVAYLDTAAYLLVDEPKKIALKYARTWLIFDVISTIPSELVHKISSTTLSSYGFFNMLRLWRLRRVSALFSRCKRLLSTHVLVGSNIELIFISFLWNRLEKDRNYNYFWVRCAKLICVTLFAVHCAACFYYLIAARYHDPKRTWIGASMENFLEQSLGLRYITSIYWSITTLTTVGYGDLHPVNTGEMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFSHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKAYLFHGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVENVVGEAKTGELCGEVGVLCYRPQLFTVRTKRLSQLLRLNRTVFLNIVQSNVGDGTIIMNNLLQHLKDQKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDTNGRTSLHIAASKGNENCVLLLLDYEADPNCRDSDGSVPLWEAILGGHEPIVQLLKDNGANLQLGDVGHFACTAAEKNNLPLLKEIVRYGGDVTSVKDNGTTALHVAVCEENIEIVKFLLKQGADIDKPGVDGWTPRDLADQQGHEEIKNLFQTTKEAKTQSVVAIPEKQTGVPFLGRFTSEPMIRPLPQEGNDGSRHGESRPRRRTNNFNNSLFGIMSATHSDEKDTLFHDNQTRRENSQTNPARVIISCSKIGKASRKLVLLPGSFNELLEIGAKKFGIIVLKVLNEDDEAAIEDIEVIRDGDHLIFVSDEQTT 900
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 33723683 33729611 - Sed0001092.2 Sed12g2388 733344
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2388 900 Pfam Ion transport protein 208 333 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g2388 900 Pfam Ion transport protein 62 203 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g2388 900 PRINTS Ankyrin repeat signature 587 602 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 PRINTS Ankyrin repeat signature 699 713 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 SUPERFAMILY cAMP-binding domain-like 331 526 IPR018490 -
Sed12g2388 900 SUPERFAMILY Voltage-gated potassium channels 57 326 - -
Sed12g2388 900 SMART ANK_2a 553 582 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 SMART ANK_2a 619 648 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 SMART ANK_2a 650 679 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 SMART ANK_2a 586 615 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 SMART ANK_2a 683 712 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 Gene3D Jelly Rolls 370 533 IPR014710 -
Sed12g2388 900 ProSiteProfiles KHA domain profile. 830 900 IPR021789 -
Sed12g2388 900 SUPERFAMILY Ankyrin repeat 558 737 IPR036770 -
Sed12g2388 900 Gene3D - 63 327 - -
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 318 327 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 274 291 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 PRINTS EAG/ELK/ERG potassium channel family signature 300 311 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed12g2388 900 ProSiteProfiles Ankyrin repeat region circular profile. 586 617 - -
Sed12g2388 900 ProSiteProfiles cAMP/cGMP binding motif profile. 406 508 IPR000595 -
Sed12g2388 900 Pfam KHA, dimerisation domain of potassium ion channel 830 893 IPR021789 -
Sed12g2388 900 ProSiteProfiles Ankyrin repeat profile. 619 651 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 Gene3D - 554 738 IPR036770 -
Sed12g2388 900 ProSiteProfiles Ankyrin repeat profile. 683 715 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 Pfam Cyclic nucleotide-binding domain 425 511 IPR000595 -
Sed12g2388 900 CDD CAP_ED 406 511 IPR000595 -
Sed12g2388 900 SMART cnmp_10 406 523 IPR000595 -
Sed12g2388 900 Pfam Ankyrin repeats (3 copies) 657 733 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 Pfam Ankyrin repeats (3 copies) 558 648 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 ProSiteProfiles Ankyrin repeat region circular profile. 619 650 - -
Sed12g2388 900 PANTHER POTASSIUM CHANNEL AKT1 22 892 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed12g2388 900 ProSiteProfiles Ankyrin repeat region circular profile. 683 711 - -
Sed12g2388 900 ProSiteProfiles Ankyrin repeat profile. 586 618 IPR002110 GO:0005515(InterPro)
Sed12g2388 900 MobiDBLite consensus disorder prediction 767 795 - -
Sed12g2388 900 FunFam Potassium channel KAT2 394 530 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2217 Sed-Chr1:16615767 Sed12g2388 Sed-Chr12:33723683 1.90E-06 dispersed
Sed08g0702 Sed-Chr8:5101328 Sed12g2388 Sed-Chr12:33723683 0.00E+00 dispersed
Sed12g2388 Sed-Chr12:33723683 Sed13g0533 Sed-Chr13:3669303 6.30E-130 dispersed
Sed12g2387 Sed-Chr12:33723683 Sed12g2388 Sed-Chr12:33723683 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2388 K21867 - csv:101220784 1513.05