Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g2390 | ATGAACTCCGATCCGCCGCCGCCGTGGTTTAACGAATCACTCAAATTCCCATTGCTCTGCGCCGCCGTGGCAATTATTTTAGCCTCAAAAATCGCGGTGGCGCTATGGTGGAATCCGAGAAGAATCGAACAGCACTTCCTCGCCCAAGGTATCCCCGGCCCGCGGTATCGCTTCTTCATCGGAAACTTCAAAGAGCTCGTCTCGATGTCGCTCGCCGCGTCTTCTCGCCCGTTGCCCGATTTCTCCCACAACATTCTCCCCCGTGTTCTCGCTTTCTACCATCATTGGAAGAAGATTTACGGTTCGACATTTTTGGTCTGGTTCGGACCCATCGGGCGGGTGGCGGTGTCGGACCCGGACATGATCCGAGAAATCTTTACCACAAACTCCAAATTCTATGAGAAAAATGAAGCTCCTCATCTCGTTAAAAGGCTTGAAGGTGATGGCCTTCTTGCTCTCAAGGATAAAAAATGGTCTCTTCATCGTCAAATTATCTCCCCCACTTTCCATATCGACAATCTCAAATTGTTGATTCCGGCGGTGGAGGAAAGTGTGGTGGATATGGTGGAGAAATGGACGGTCACGGCGGACGCCAACGCCTCCAACGAGGTCGAGATCGAGGTTTTCGATTGTTTCCAAACCCTAACCGAAGACGTCATAACGAAAACCGTCTTCGGAAGAAGCTATGAAGATGGTAAAGCCATTTTCAAGCTTCAAACTCAACAAATGATGTTAGCATCGGATGCTTTTCAAAAGGTCTCCATTCCTGGCTATAGGTTTTTGCCGACAAGAACGAATATAAATTCATGGAAATTAGACAAAGAAATAAGGAAATCATTGAAGAAATTGATTGAGGTTCGAAAAGGAAATTCAGAGAAAATTGGGGGCATGGATGAAAAAGGGCCAAAAGATTTATTGGGGCTGCTGATTCACGCTTCCACGTCAGCATTAAATAACGATTTTACTGTCCACGACATCGTGGAAGAGTGCAAAACCTTTTTCTTTGCTGGCAAACAGACCACGTCAAGTCTGCTGACGTGGACTACTGTCTTGCTGGCAATGCATCCACAGTGGCAAACTCAGGCACGTGACGAGGTTCTTAGCGTGTGCGGTCCACGTGCCCTTCCTTCTAAAGATGATATTTCTAAGTTGAAGATCATGAGCATGATATTAAACGAGTCGTTGCGATTGTATTCACCTACGGTGGCTACGATTCGACGTGCAAAAGCCAACGTGGAGGTAGGAGGGCGGATGATCCCGCGTGGGACGGAGCTTTTGATTCCAATTATAGGCGTCCATCATGATCAAAATATTTGGGGTAGTGATGTGAATGAATTCAATCCATGGCGATTTTCAGAGGGAATAGGTCGTGCTGGAAATCATCCAACAGGGTTCATTCCGTTTGGGCTCGGAGTTCGTACTTGCATTGGCAAAAACTTAGCTCTTTTGCAAGTAAAGTTGACGATGGCAATCATACTTCAACGATTCTCTTTTACATTGGCTCCCACCTATCAGCATGCACCAACTGTGTTGTTGCTTCTCTATCCACAATACGGAGCACCCGTCATTTTTAAAAAGATATCGAATTCAGTGGTTGATTAA | 1602 | 46.38 | MNSDPPPPWFNESLKFPLLCAAVAIILASKIAVALWWNPRRIEQHFLAQGIPGPRYRFFIGNFKELVSMSLAASSRPLPDFSHNILPRVLAFYHHWKKIYGSTFLVWFGPIGRVAVSDPDMIREIFTTNSKFYEKNEAPHLVKRLEGDGLLALKDKKWSLHRQIISPTFHIDNLKLLIPAVEESVVDMVEKWTVTADANASNEVEIEVFDCFQTLTEDVITKTVFGRSYEDGKAIFKLQTQQMMLASDAFQKVSIPGYRFLPTRTNINSWKLDKEIRKSLKKLIEVRKGNSEKIGGMDEKGPKDLLGLLIHASTSALNNDFTVHDIVEECKTFFFAGKQTTSSLLTWTTVLLAMHPQWQTQARDEVLSVCGPRALPSKDDISKLKIMSMILNESLRLYSPTVATIRRAKANVEVGGRMIPRGTELLIPIIGVHHDQNIWGSDVNEFNPWRFSEGIGRAGNHPTGFIPFGLGVRTCIGKNLALLQVKLTMAIILQRFSFTLAPTYQHAPTVLLLLYPQYGAPVIFKKISNSVVD | 533 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 33773706 | 33776164 | + | Sed0011191.1 | Sed12g2390 | 733346 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g2390 | 533 | PRINTS | P450 superfamily signature | 336 | 353 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | P450 superfamily signature | 389 | 400 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | P450 superfamily signature | 475 | 486 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | Gene3D | Cytochrome P450 | 36 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | SUPERFAMILY | Cytochrome P450 | 51 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 97 | 116 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 345 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 215 | 233 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | PRINTS | E-class P450 group I signature | 325 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed12g2390 | 533 | FunFam | Cytochrome P450 734A1 | 36 | 528 | - | - | |
| Sed12g2390 | 533 | PANTHER | CYTOCHROME P450 FAMILY MEMBER | 23 | 519 | IPR050665 | GO:0004497(PANTHER)|GO:0010268(PANTHER)|GO:0016131(PANTHER) | |
| Sed12g2390 | 533 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed12g2390 | 533 | Pfam | Cytochrome P450 | 92 | 506 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g2343 | Sed-Chr7:39311203 | Sed12g2390 | Sed-Chr12:33773706 | 4.60E-09 | dispersed | |
| Sed11g0090 | Sed-Chr11:875648 | Sed12g2390 | Sed-Chr12:33773706 | 1.20E-202 | dispersed | |
| Sed12g2390 | Sed-Chr12:33773706 | Sed09g0967 | Sed-Chr9:31682113 | 4.40E-06 | dispersed | |
| Sed10g1426 | Sed-Chr10:30418838 | Sed12g2390 | Sed-Chr12:33773706 | 2.40E-206 | wgd | |
| Sed12g2390 | Sed-Chr12:33773706 | Sed08g0706 | Sed-Chr8:5173316 | 1.10E-177 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g2390 | K15639 | - | csv:101213466 | 800.045 |