Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2395 ATGAATCCATTATGCGTACAGAAACCTGAAGAACAGATATCAATGGAGGACAAGAAAGCTAACCTGACTCTACTCTTGTTGATCGTCTTCCTCATCACTCTTCTCATCCTCGCTCGAATTTTCTTCAAACTCACAAACGTGTTCTTCCTCATCTGCGGCATCGACGTATCCCTCACCGCCGCAATCCTCGCCTACATGATCATCAGAACGCGATTCAACCGGAGAAGAAACCAGATCGTGTCGCAGTTAGTTTCGGAAGGTCGGGAGCTTCGAATCGAGTACAGTTTCCTGCGAAAAGTCGCCGGAGTTCCGACGAAGTTCCGGTTCAAAGAGCTTGAAGAGGCGACGGACTATTTCAGATCCGTGATCGGCAAAGGATCCTCCGGCTCCGTCTTCAAAGGAGTCCTCAAGGACGGCACGGCGGTGGCGGTGAAGCGGATCGAGTGCGAGATCCGCGGCGAAAAGGAGTTCCGAGCGGAGGTTTCCGCCATTGCCAGTGTTCAACACACGAATCTCGTTCGCCTAATTGGATACTGCACGAACTCATCTGGACCTAGGTTTCTCGTTTACGAATTCGTCTCGAACGGATCTCTGAATTCCTGGATCTTTCCTCAAAACCCTAGGTGCAAGAAGCAGAACAGATCTGGAATTTCTGGAGGCTGTTTGGCTTGGGATCTGCGATTCAGAGTCGCGATTGATGTCGCGAAAGCCCTAGCGTATCTTCATCACGATTGTAGATCTAGAATCCTGCATCTCGATGTGAAGCCGGAGAACATCCTCCTCGATGAAAATTACAGAGCGATTGTTTCCGATTTCGGACTGTCGAAGCTCATGGCGAAGGAGGAGAGCCGGATTATGACGTCGATGAGAGGTACGAAGGGATATTTGGCGCCGGAATGGTTACTGGAGAACGGAATCTCAGAGAAATCGGACGTATTCAGTTACGGAATGGTTGTTCTGGAGCTAATCGGAGGGCGGCGGAATGTGAGCTTAGTCGAATCCGGCGAGGACAGAGCTAAGAGGAAATGGCAGTATTATCCACGGATCTTGAGTGCGAAGATGAAGGAAGGGAGATTAATGGAGGCTGTGGATCAGAGACTGTTGGAAACTGGATCGATCGATGAGAAGGAGGTTCGGAATCTGGTTTGCGTTGGTTTGTGGTGTATTCAAGAGAAGGCGAGGTTGCGGCCGACGATGGCGACAGTGGTGGATCTGCTTGAAGGCCGCGTCGCGGTGGAGGAGCCGCCGGAGACTGAGATGCTCGTTGTTGATCTGTTGGCCGTTGATGAAGAGACGATGAACGGCTGTGAGCGGCCGGTGAAGGTCGCTGCGTTTGGGGAACGGATGAACGATCGAGATCTTGCTACGTCGTCGTCGACGTTCTCTTATGCGTTTTCTGTACTCTCCGCCCGGTGA 1416 51.55 MNPLCVQKPEEQISMEDKKANLTLLLLIVFLITLLILARIFFKLTNVFFLICGIDVSLTAAILAYMIIRTRFNRRRNQIVSQLVSEGRELRIEYSFLRKVAGVPTKFRFKELEEATDYFRSVIGKGSSGSVFKGVLKDGTAVAVKRIECEIRGEKEFRAEVSAIASVQHTNLVRLIGYCTNSSGPRFLVYEFVSNGSLNSWIFPQNPRCKKQNRSGISGGCLAWDLRFRVAIDVAKALAYLHHDCRSRILHLDVKPENILLDENYRAIVSDFGLSKLMAKEESRIMTSMRGTKGYLAPEWLLENGISEKSDVFSYGMVVLELIGGRRNVSLVESGEDRAKRKWQYYPRILSAKMKEGRLMEAVDQRLLETGSIDEKEVRNLVCVGLWCIQEKARLRPTMATVVDLLEGRVAVEEPPETEMLVVDLLAVDEETMNGCERPVKVAAFGERMNDRDLATSSSTFSYAFSVLSAR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33796123 33797917 + Sed0015885.1 Sed12g2395 733351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2395 471 Gene3D Phosphorylase Kinase; domain 1 82 192 - -
Sed12g2395 471 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524(InterPro)
Sed12g2395 471 PANTHER OS07G0415500 PROTEIN 16 423 - -
Sed12g2395 471 FunFam Putative receptor-like protein kinase 193 414 - -
Sed12g2395 471 ProSiteProfiles Protein kinase domain profile. 117 410 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2395 471 Gene3D Transferase(Phosphotransferase) domain 1 193 420 - -
Sed12g2395 471 SUPERFAMILY Protein kinase-like (PK-like) 100 407 IPR011009 -
Sed12g2395 471 Pfam Protein kinase domain 121 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2395 471 SMART serkin_6 117 406 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2395 471 FunFam Putative receptor-like protein kinase 84 192 - -
Sed12g2395 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2395 Sed-Chr12:33796123 Sed13g0101 Sed-Chr13:671105 1.40E-75 dispersed
Sed12g2395 Sed-Chr12:33796123 Sed08g0712 Sed-Chr8:5201523 1.30E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80051 PF00069 Pkinase 7.40E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2395 - - - 0.0