Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2419 ATGCTTCCCATTTTGCTTCTTCTCCTTCTTCTTCTTCTTCATTCAGCTCAATCGGAGCCCACCGCCGACAAGCAAGCCCTTCTCGATTTCATCAACAAAACCCCACATGAAAATCGCCTTCAATGGAACGATTCAGCCTCTGTTTGTAACTGGGTTGGAGTTACCTGCGATGCCAATCGCTCCTTTGTTTTCGCTCTCCGGTTGCCCGGCGTGGGTCTCGTCGGCCCGATTCCGGCCAACACTCTCGGCCGGTTGAGCCGCCTTCGGGTTCTGAGTCTCCGGTCCAACCGAATCTCGGGGGATTTACCCGCGGATTTTGCTAATTTGGGGTTTCTTCGGAGTCTGTATCTTCAGGGGAATGAGTTTTCCGGCGGGTTTCCGGTGAGTTTGACGCAGTTGACTCGGTTGACTCGTTTGGATCTCTCGTTTAACGATTTCTCTGGTCCGATTCCGTTTTCGGTAAATAATCTTACCCATTTGTCTCGGCTTTTTCTTCAGAATAATGGGTTTTCTGGTTCTTTGCCGAGTATTTCTTCCGTTAATTTAACAAGCTTCAATGTCTCCAACAATCGCCTCAATGGATCCATCCCCAAATCCCTTGAGAAATTCTCTTCCGCTTCATTCGCCGGAAATTTAGCCCTCTGCGGCGGCCCATTGCCGCCCTGCAACCCCTTTTTCCCCTCCCCTGCTCCGTCGCCGACCACCGCCGTGAAATCCCCCGAAACTCCGGTCGAGACAAAGGCGAAAAAGCTCTCCATCGCCGCCATTGTCGGAATCGTAGTCGGAGCCGCATTGGTTGTGTTTCTACTGCTGTTTTTGCTTCTATTCTGCCTCCGGACTCGGCAGGCGGCAAAGCCGGTGCCGAGTCCGGTTGATGTGCCGGGGGAGGCCGCCGCCGGCACATCGTCTTCGAAAGGTGAGATCACAGGCGGATCGGTGGAGGTGGAGAAGAACAAATTAGTGTTTATCGAAGGTGGGGTTTACAGATTTGATTTGGAGGATTTGCTGAGAGCTTCGGCGGAGGTTTTGGGGAAAGGGAGCGTCGGAACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTCGTCGTTAAGAGATTGAAAGATGTTGTGATGACGAAGAAGGAATTCGAATTGCAAATGCAATTTCTGGGAAATGTGAATCATGAGAATGTTGTTCCTCTCAGAGCTTTTTACTTTTCCAGAGATGAGAAATTGGTTGTTTCCGATTACTTCGCCGCCGGCAGCCTTTCCGCTTCACTTCACGGTAGTAGAGGATCCGGCCGGCCGATACTAGACTGGGACAATCGAGTGAAAATAGCGTTAAACGCAGCAAGAGGGTTGGCTCACCTCCACGTGTCGGGAAAACTCGTCCACGGCAACATCAAATCGTCGAACATCCTCCTCCGCCCCGATCACGACAGCGCCGCTGTCTCCGACTACGGCCTCAACCCTCTCTTCGGCGCCTCGACGCCGCCCAATCGGATCGCTGCCTATCGTGCGCCGGAGGTTGTAGAAACCCAAAAGGTTACCTTGAAGTCCGATGTGTACAGTTTTGGAGTCTTGCTGTTGGAACTTTTGACTGGAAAATCGCCGAATCAGGCATCGTTGGGCGAAGAAGGGATTGATCTTCCTCGATGGGTCCAGTCCGTGGTTCGAGAGGAATGGACCGCCGAGGTTTTTGATGTGGAATTGATGAGGTACCACAACATTGAAGAAGAGATGGTTCAGTTGCTACAAATCGCAATGACTTGTGTTGCCATTGTGCCAGACCAGCGGCCGTCGATGCAAGAGGTAGTTCGTATGATTGAGGATTTGAACCGAGTGGAGACCGACGATGGGTTACGAGCGTCGTCCGATGACCCGTCGAAAGGATCAGAGGGTCACACGCCACCACAAGAGTCCAAAACCACTCCTTTAGAAGCAGGTGGAGCATCGTAG 1941 52.24 MLPILLLLLLLLLHSAQSEPTADKQALLDFINKTPHENRLQWNDSASVCNWVGVTCDANRSFVFALRLPGVGLVGPIPANTLGRLSRLRVLSLRSNRISGDLPADFANLGFLRSLYLQGNEFSGGFPVSLTQLTRLTRLDLSFNDFSGPIPFSVNNLTHLSRLFLQNNGFSGSLPSISSVNLTSFNVSNNRLNGSIPKSLEKFSSASFAGNLALCGGPLPPCNPFFPSPAPSPTTAVKSPETPVETKAKKLSIAAIVGIVVGAALVVFLLLFLLLFCLRTRQAAKPVPSPVDVPGEAAAGTSSSKGEITGGSVEVEKNKLVFIEGGVYRFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFELQMQFLGNVNHENVVPLRAFYFSRDEKLVVSDYFAAGSLSASLHGSRGSGRPILDWDNRVKIALNAARGLAHLHVSGKLVHGNIKSSNILLRPDHDSAAVSDYGLNPLFGASTPPNRIAAYRAPEVVETQKVTLKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMTCVAIVPDQRPSMQEVVRMIEDLNRVETDDGLRASSDDPSKGSEGHTPPQESKTTPLEAGGAS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33925304 33929005 - Sed0006756.1 Sed12g2419 733375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2419 646 Gene3D Ribonuclease Inhibitor 182 222 IPR032675 -
Sed12g2419 646 FunFam Probable inactive receptor kinase RLK902 20 178 - -
Sed12g2419 646 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Sed12g2419 646 Gene3D Transferase(Phosphotransferase) domain 1 413 622 - -
Sed12g2419 646 FunFam pollen receptor-like kinase 1 307 411 - -
Sed12g2419 646 ProSiteProfiles Protein kinase domain profile. 337 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2419 646 MobiDBLite consensus disorder prediction 610 646 - -
Sed12g2419 646 Pfam Leucine rich repeat 86 146 IPR001611 GO:0005515(InterPro)
Sed12g2419 646 SUPERFAMILY Protein kinase-like (PK-like) 341 603 IPR011009 -
Sed12g2419 646 Pfam Protein tyrosine and serine/threonine kinase 341 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2419 646 PANTHER OS05G0588300 PROTEIN 6 613 IPR050994 -
Sed12g2419 646 Pfam Leucine rich repeat N-terminal domain 22 57 IPR013210 -
Sed12g2419 646 MobiDBLite consensus disorder prediction 624 640 - -
Sed12g2419 646 MobiDBLite consensus disorder prediction 286 309 - -
Sed12g2419 646 SUPERFAMILY L domain-like 42 205 - -
Sed12g2419 646 Gene3D Phosphorylase Kinase; domain 1 306 411 - -
Sed12g2419 646 Pfam Leucine Rich Repeat 181 202 IPR001611 GO:0005515(InterPro)
Sed12g2419 646 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 412 616 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2770 Sed-Chr8:39295344 Sed12g2419 Sed-Chr12:33925304 4.00E-118 dispersed
Sed12g2137 Sed-Chr12:31974919 Sed12g2419 Sed-Chr12:33925304 8.90E-70 dispersed
Sed12g2419 Sed-Chr12:33925304 Sed14g0561 Sed-Chr14:5658830 4.50E-130 dispersed
Sed11g0086 Sed-Chr11:807827 Sed12g2419 Sed-Chr12:33925304 6.00E-199 wgd
Sed12g2419 Sed-Chr12:33925304 Sed08g0731 Sed-Chr8:5339585 1.00E-230 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80052 PF00069 Pkinase 4.00E-34 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2419 - - - 0.0