Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2433 | ATGTCGTCTCCGGCTCCGACGTTTCCGCCGCCGACGAATACCACGTCGCCGCCACCTTCGGTCACCGGCGCACCACCACCGGCTGCTCCTTCTCTCTCCCCACCGCCTCCGGATCCTCCCTCAGAGCCTCCTCCGTCTTCATCTCCTCCGCCGCCGCCTTCGGACAGTACCCCGCCTTCGAGTTCTCCGCCGCCGCCGCCTAACAACTCGACGACGCCGTCGGGATCCGGTACGCCTGCGAATCCCGGTGGAAGTCAGACTCCGCCGTCGGAAGCGACTCCGTCTCCGTCTTCGTCGTCGTCGGGAAATTCGGCCGGACTTGTGGCTGGTCTCGCCATTGCCGGCGTGGTGGTTGTTGTAGCGTTTATTGCTATGTATTTCTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAAGCGTACTACCGGCCGCCGCCTCCGCCAGCGCCGCCGGCGGCGTTCAAAGATGGTTCATATGGTCCCCAACAGCACAACTGGCAATCACATCCGCCGCCGCCGCAACCGGAATACGCACCGAAGCCGCCTCTTGTGCCGGCATCGCGGCCACCGCCGTCGCCGCCGATTATAAACAGCAGTGGAGGATCTGGATCTAATTATTCAGGATCCGAATATTCATTGACTCCAGCTCAATCTTCCATTCCATTAGGATTCTCACAGTCACAGAGCAGTTTCAGTTATGAAGAATTAGCAATGGCGACTGATGGATTTTCAGAAGCCAAGCTGCTTGGACAAGGTGGGTTTGGTTATGTTCATAAAGGGATTCTTCCAAACGGTAAAGAAGTTGCTGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAACGTGAATTTCAAGCAGAAGTTGAAATAATCAGCCGAGTTCATCATAGGCATCTTGTTTCCTTGGTGGGATTTTGCATCACTGGCTCTAAAAGATTGCTGGTTTATGAATTTGTTGCAAACAACACATTGGAGTTTCACTTGCACGAGAAAGGACGACCTACCATGGATTGGCCAACGAGACTGAAAATTGCTCTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCGAAGATCATTCATCGTGACATCAAAGCAGCAAATATACTCTTGGATCTCAAATTTGAAGCAAAGGTTGCAGATTTTGGGCTTGCCAAGTTATCTTCTGATCTTAATACCCATGTTTCAACCCGAGTCATGGGAACTTTTGGATATCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACCGATAAGTCAGATGTTTTCTCCTTCGGAGTAATGCTTTTGGAGTTGATTACTGGGCGTAGACCTGTTGATACAACTCAATCCTTCAATGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGGGCCACAGAGGAGGGAAAGTACGACGATCTAGTGGATCCAAAGCTGCGAGATAACTACAACCACAACGAGATGGCGCGCATGGTAGCTTGTGCCGCCGCTTGTGTGCGTCATTCGGCGAGGCGCAGGCCACGGATGAGTCAGGTGGTCCATGCTCTTGAAGGCGAATCCTCGCTTTCTGATCTAAACGAAGGGATCCGACCTGGACATAGCACTGTCTACAGCTCCTATGGAAGCTCAGACTATGACACGGCTCAATACAACGAGGACCTGAAAAAGTTCAGGAAGATGGCATTGGCGAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCCACGAGCGAGTATGGTTTGTACCCGTCAGGGTCGAGTGGGGACGGACAAACAACCAGGGAAATGGAGATGAGAACAACGAAGAAAGAAAGTGGGGGTTTTAGTGCAAGTTCGTGA | 1833 | 52.21 | MSSPAPTFPPPTNTTSPPPSVTGAPPPAAPSLSPPPPDPPSEPPPSSSPPPPPSDSTPPSSSPPPPPNNSTTPSGSGTPANPGGSQTPPSEATPSPSSSSSGNSAGLVAGLAIAGVVVVVAFIAMYFCLRKKRRRDEEAYYRPPPPPAPPAAFKDGSYGPQQHNWQSHPPPPQPEYAPKPPLVPASRPPPSPPIINSSGGSGSNYSGSEYSLTPAQSSIPLGFSQSQSSFSYEELAMATDGFSEAKLLGQGGFGYVHKGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGFCITGSKRLLVYEFVANNTLEFHLHEKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDLNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTTQSFNDDGLLDWARPLLLRATEEGKYDDLVDPKLRDNYNHNEMARMVACAAACVRHSARRRPRMSQVVHALEGESSLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTTKKESGGFSASS | 610 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 34021080 | 34024447 | - | Sed0025933.1 | Sed12g2433 | 733389 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2433 | 610 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 318 | 526 | - | - | |
Sed12g2433 | 610 | Pfam | Protein tyrosine and serine/threonine kinase | 246 | 515 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 135 | 209 | - | - | |
Sed12g2433 | 610 | FunFam | proline-rich receptor-like protein kinase PERK1 | 218 | 317 | - | - | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 1 | 104 | - | - | |
Sed12g2433 | 610 | Gene3D | Transferase(Phosphotransferase) domain 1 | 318 | 527 | - | - | |
Sed12g2433 | 610 | ProSiteProfiles | Protein kinase domain profile. | 242 | 516 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 73 | 104 | - | - | |
Sed12g2433 | 610 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 362 | 374 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g2433 | 610 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 74 | 559 | IPR047117 | - | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 567 | 592 | - | - | |
Sed12g2433 | 610 | SUPERFAMILY | Protein kinase-like (PK-like) | 218 | 515 | IPR011009 | - | |
Sed12g2433 | 610 | ProSitePatterns | Protein kinases ATP-binding region signature. | 248 | 270 | IPR017441 | GO:0005524(InterPro) | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 567 | 610 | - | - | |
Sed12g2433 | 610 | Gene3D | Phosphorylase Kinase; domain 1 | 201 | 317 | - | - | |
Sed12g2433 | 610 | SMART | serkin_6 | 242 | 515 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 165 | 195 | - | - | |
Sed12g2433 | 610 | MobiDBLite | consensus disorder prediction | 1 | 72 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g0796 | Sed-Chr8:6160703 | Sed12g2433 | Sed-Chr12:34021080 | 6.60E-31 | dispersed | |
Sed11g0065 | Sed-Chr11:603717 | Sed12g2433 | Sed-Chr12:34021080 | 3.40E-126 | dispersed | |
Sed12g2433 | Sed-Chr12:34021080 | Sed13g0992 | Sed-Chr13:7764733 | 5.50E-146 | dispersed | |
Sed10g1393 | Sed-Chr10:29843960 | Sed12g2433 | Sed-Chr12:34021080 | 5.10E-182 | wgd | |
Sed11g0064 | Sed-Chr11:603717 | Sed12g2433 | Sed-Chr12:34021080 | 2.10E-182 | wgd | |
Sed12g2433 | Sed-Chr12:34021080 | Sed06g0541 | Sed-Chr6:4743255 | 5.50E-154 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80053 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-47 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2433 | - | - | - | 0.0 |