Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2433 ATGTCGTCTCCGGCTCCGACGTTTCCGCCGCCGACGAATACCACGTCGCCGCCACCTTCGGTCACCGGCGCACCACCACCGGCTGCTCCTTCTCTCTCCCCACCGCCTCCGGATCCTCCCTCAGAGCCTCCTCCGTCTTCATCTCCTCCGCCGCCGCCTTCGGACAGTACCCCGCCTTCGAGTTCTCCGCCGCCGCCGCCTAACAACTCGACGACGCCGTCGGGATCCGGTACGCCTGCGAATCCCGGTGGAAGTCAGACTCCGCCGTCGGAAGCGACTCCGTCTCCGTCTTCGTCGTCGTCGGGAAATTCGGCCGGACTTGTGGCTGGTCTCGCCATTGCCGGCGTGGTGGTTGTTGTAGCGTTTATTGCTATGTATTTCTGTTTAAGAAAGAAGAGAAGACGCGACGAGGAAGCGTACTACCGGCCGCCGCCTCCGCCAGCGCCGCCGGCGGCGTTCAAAGATGGTTCATATGGTCCCCAACAGCACAACTGGCAATCACATCCGCCGCCGCCGCAACCGGAATACGCACCGAAGCCGCCTCTTGTGCCGGCATCGCGGCCACCGCCGTCGCCGCCGATTATAAACAGCAGTGGAGGATCTGGATCTAATTATTCAGGATCCGAATATTCATTGACTCCAGCTCAATCTTCCATTCCATTAGGATTCTCACAGTCACAGAGCAGTTTCAGTTATGAAGAATTAGCAATGGCGACTGATGGATTTTCAGAAGCCAAGCTGCTTGGACAAGGTGGGTTTGGTTATGTTCATAAAGGGATTCTTCCAAACGGTAAAGAAGTTGCTGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAACGTGAATTTCAAGCAGAAGTTGAAATAATCAGCCGAGTTCATCATAGGCATCTTGTTTCCTTGGTGGGATTTTGCATCACTGGCTCTAAAAGATTGCTGGTTTATGAATTTGTTGCAAACAACACATTGGAGTTTCACTTGCACGAGAAAGGACGACCTACCATGGATTGGCCAACGAGACTGAAAATTGCTCTGGGATCTGCCAAGGGATTGGCCTACCTTCATGAGGACTGTAATCCGAAGATCATTCATCGTGACATCAAAGCAGCAAATATACTCTTGGATCTCAAATTTGAAGCAAAGGTTGCAGATTTTGGGCTTGCCAAGTTATCTTCTGATCTTAATACCCATGTTTCAACCCGAGTCATGGGAACTTTTGGATATCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACCGATAAGTCAGATGTTTTCTCCTTCGGAGTAATGCTTTTGGAGTTGATTACTGGGCGTAGACCTGTTGATACAACTCAATCCTTCAATGACGATGGATTGCTCGATTGGGCAAGGCCATTACTACTTCGGGCCACAGAGGAGGGAAAGTACGACGATCTAGTGGATCCAAAGCTGCGAGATAACTACAACCACAACGAGATGGCGCGCATGGTAGCTTGTGCCGCCGCTTGTGTGCGTCATTCGGCGAGGCGCAGGCCACGGATGAGTCAGGTGGTCCATGCTCTTGAAGGCGAATCCTCGCTTTCTGATCTAAACGAAGGGATCCGACCTGGACATAGCACTGTCTACAGCTCCTATGGAAGCTCAGACTATGACACGGCTCAATACAACGAGGACCTGAAAAAGTTCAGGAAGATGGCATTGGCGAGCCAGGAGTACGGCAGCGAGTACAGCGAGCCCACGAGCGAGTATGGTTTGTACCCGTCAGGGTCGAGTGGGGACGGACAAACAACCAGGGAAATGGAGATGAGAACAACGAAGAAAGAAAGTGGGGGTTTTAGTGCAAGTTCGTGA 1833 52.21 MSSPAPTFPPPTNTTSPPPSVTGAPPPAAPSLSPPPPDPPSEPPPSSSPPPPPSDSTPPSSSPPPPPNNSTTPSGSGTPANPGGSQTPPSEATPSPSSSSSGNSAGLVAGLAIAGVVVVVAFIAMYFCLRKKRRRDEEAYYRPPPPPAPPAAFKDGSYGPQQHNWQSHPPPPQPEYAPKPPLVPASRPPPSPPIINSSGGSGSNYSGSEYSLTPAQSSIPLGFSQSQSSFSYEELAMATDGFSEAKLLGQGGFGYVHKGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGFCITGSKRLLVYEFVANNTLEFHLHEKGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDLNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDTTQSFNDDGLLDWARPLLLRATEEGKYDDLVDPKLRDNYNHNEMARMVACAAACVRHSARRRPRMSQVVHALEGESSLSDLNEGIRPGHSTVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTTKKESGGFSASS 610
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 34021080 34024447 - Sed0025933.1 Sed12g2433 733389
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2433 610 FunFam Proline-rich receptor-like protein kinase PERK1 318 526 - -
Sed12g2433 610 Pfam Protein tyrosine and serine/threonine kinase 246 515 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2433 610 MobiDBLite consensus disorder prediction 135 209 - -
Sed12g2433 610 FunFam proline-rich receptor-like protein kinase PERK1 218 317 - -
Sed12g2433 610 MobiDBLite consensus disorder prediction 1 104 - -
Sed12g2433 610 Gene3D Transferase(Phosphotransferase) domain 1 318 527 - -
Sed12g2433 610 ProSiteProfiles Protein kinase domain profile. 242 516 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2433 610 MobiDBLite consensus disorder prediction 73 104 - -
Sed12g2433 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2433 610 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 74 559 IPR047117 -
Sed12g2433 610 MobiDBLite consensus disorder prediction 567 592 - -
Sed12g2433 610 SUPERFAMILY Protein kinase-like (PK-like) 218 515 IPR011009 -
Sed12g2433 610 ProSitePatterns Protein kinases ATP-binding region signature. 248 270 IPR017441 GO:0005524(InterPro)
Sed12g2433 610 MobiDBLite consensus disorder prediction 567 610 - -
Sed12g2433 610 Gene3D Phosphorylase Kinase; domain 1 201 317 - -
Sed12g2433 610 SMART serkin_6 242 515 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2433 610 MobiDBLite consensus disorder prediction 165 195 - -
Sed12g2433 610 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0796 Sed-Chr8:6160703 Sed12g2433 Sed-Chr12:34021080 6.60E-31 dispersed
Sed11g0065 Sed-Chr11:603717 Sed12g2433 Sed-Chr12:34021080 3.40E-126 dispersed
Sed12g2433 Sed-Chr12:34021080 Sed13g0992 Sed-Chr13:7764733 5.50E-146 dispersed
Sed10g1393 Sed-Chr10:29843960 Sed12g2433 Sed-Chr12:34021080 5.10E-182 wgd
Sed11g0064 Sed-Chr11:603717 Sed12g2433 Sed-Chr12:34021080 2.10E-182 wgd
Sed12g2433 Sed-Chr12:34021080 Sed06g0541 Sed-Chr6:4743255 5.50E-154 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80053 PF07714 PK_Tyr_Ser-Thr 2.30E-47 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2433 - - - 0.0