Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2458 ATGCCTGTAAATCCATGGACCCTCCTTTCATCTATCCTAATCCTCTGTTTTTCAGCCTTATTTCTCTTCCCTTTCACAGCTTCTGCCATTAATGAACAGGGTCAAGCTCTACTCTCTTGGAAGCTAAGTTTGAATGATTCAAACAAGGTGTTAAGCAATTGGGACCCCAACAATGAAACTCCATGTAAGTGGTTTGGAATAACTTGCAACAAAAACAGACAAGTAATAGAAGTGATTGTCAAGAACGTGAACTTACCTGGTGAGCTTCCATGGAATTTCTCTTCATTGTTGTCTTTGAACAAGCTCGTCTTCTCCGGAGTGAATCTCACTGGCTCTATTCCTAAAGAGATCGGTGTTCTAACCCAGTTGCAGAGCTTGGATCTCAGTGGCAATGGCTTCACTGGAGAAATCCCCAGTGAGATCTGTGCTTTGCTGAATCTCCAACAGCTTTATCTCAATTCAAATCTTCTTGATGGATCAATCCCTGCAGGAATTGGGAATCTCACAAACTTGAAGGAACTGATTCTTTATGACAATCAGTTAAGTGGAGAAATTCCTGTTAGTATAGGAAATTTGAAGCAGATTGAAGTGATTAGAGCTGGAGGGAACAAGAACTTACATGGTTCTTTGCCGGAAGAAATCGGTAACTGCAGCAATTTGGTGATTCTTGGGCTGGCTGAAACAAGCATCTCCGGCGTAATTCCGGCGAGTCTTGGCCGGCTCAAGAAGCTTCAGACACTGGCAATCTATTCTGCTCTTCTCTCCGGCCAGATTCCTCATGAACTTGGCGATTGTACTGAGCTTCAAAATCTCTATCTATATGAAAACTCAATCTCTGGTTCGATTCCAAGCTCATTAGGAAGGTTGCAGAATCTTGAGAGTCTTCTTCTATGGCAGAACAATTTGGTCGGAGTTATACCGCCGGAGTTAGGTAAATGCGAGCAGTTGTTAGTCATCGACGTTTCGATCAATTCCCTGACCGGAAGAATTCCCTCAACGTTTGGGGATTTGACAATGCTTCAAGAATTGCAACTGAGTTCAAATCAATTATCAGGTGAGATTCCGAAAGAGATCGCGAATTGTTCGAGAATCACTCACATCGAGCTTGATGATAATCAATTCACTGGTACGATTCCATCTGAATTAGGAAATCTCTCCAATCTGACATTGCTGTTCTTGTGGCAAAATCAATTTGAAGGAAATATTCCACAAACTATTTCAAATTGTCGCAATCTCGAGGCAGTAGATTTGTCATTGAACGGATTGACAGGTTCGATTCCGACGGGAATTTTTCAGTTGAAGAAGCTTTCCAAGCTTTTGCTTCTCTCCAACAATCTCTCCGGCGAGATTCCGCCGGCGATTGGAAATTGTTCTTCTCTGTTGCGATTCCGAGCGAGTAACAACAAGCTCACGGGAGAAATTCCGCCGGAGATTGGGGATTTGAAGAGCTTGATTTTCCTGGACCTTGGAAACAATCGCCTCACTGGAGCATTGCCTCCGGAGATTTCTGGATGCAGAAATTTGACATTCATAGATATGCATTCCAATTCTCTAATGAAATCTCTTCCAGAAGAATTCAACCAGCTTTCTTCGCTACAGTTTGTTGATCTCTCAAATAACCTAATCGATGGAACGCCGAGTTTTGGATCATTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCACAGGACCAATACCGATTCAAATCGGTTCCTGCTTGAAACTACAGTTTCTGGATTTAAGTTGCAATCAACTCTCAGGAAACATTCCGTCTAGTTTAGGCAAGATTCCTTCACTCGAAATCGGTCTGAATCTGAGCTTGAACCGATTATCCGGCGAGATTCCGCCGGAGTTTGCAAATCTAGACAAGCTCGGGTCACTAGACCTCTCTTACAACCAACTCTCCGGCGACCTCCACATTCTCGCAGAGCTACAAAATCTCGTAATCCTAAATGTATCACACAACAGTTTCACAGGACGCGTACCTGAAACGGCATTTTTCGCGCAGCTTCCTGTAAGCGTCCTCTCCGGGAATCCAGACTTGTGCTTCGCCAGCGAAAAGTGCTACGCCGATGACCACGGCGGCGGCGCTCGCCACACACTAGCGGCTCGAGTGGCGATGATCGTATTACTCTGCACAGCGTTCGCGCTACTGCTAGCAGCAGTGTACACCATTCTCAAAGACAGGCATTCACGCCGAGGATGCTTCAACGGATCCCGCGACGAAGATTCCGACGCCGCCATGGACAGCGACCTTGAGCTCGGCTCAGACTGGGAAGTAACACTATACCAGAAGCTCGACCTCTCAATCTCCGACGTAATCAAATCCTTAACGCCGGCGAACATCATCGGCCGCGGGAAGACCGGCGTCGTGTACAGAGCCTCCATCTCGTCAGGTCAGACAATCGCGGTGAAGCGATTCCAGTCATCGGAAAAGCACTCCGCGGCCGCGTTTTCATCGGAAATCGCAACATTAGCGAGAATCCGGCACCGGAACATTGTGCGATTGGTAGGGTGGGGAGCGAATCGGAAGACGAAGCTGCTGTTCTACGATTACTTGGGGAATGGGAATTTGGGGGCGTGGCTGCACGAGGGGAACGGGCGCGTGGGGCTGGATTGGGAGTGTAGGTTTAAGATAGCGTTGGGAGTGGCCGAAGGATTGGGGTATTTGCACCACGATTGCGTGCCGGCGATATTGCACCGGGACGTGAAGGCTCACAATATTCTCTTGGGGGACCGCTTCCAGGCGTGTTTGGCGGACTTTGGGCTCGCCCGGTTGGTTGAAGATGGTTCCACCGGTTCGCCTTCTTCGAACCCCCAGTTCGCGGGGTCCTACGGCTATTTTGCACCTGAATATGGCTGCATGTTAAGGATCACAGAAAAAAGCGACGTGTATAGTTATGGAGTCGTTTTGCTCGAGTTAATAACAGGCAAAAAGCCTGCCGACTCCTCTTTCGTAGAAGGGCAACACGTGATTCAATGGGTGAGAGAGCATTTAAAGATGAAGAAGGATCCTATTTCAATCTTGGATTCAAGACTTCAAGGTCAACCCGACCCACAGATACAAGAGATCATGCAGGTATTAGGAATTTCTCTGCTCTGTACCAGCGACCGCGCTGAAGATCGACCGACGATGAAAGACGTGGCAGCTCTTTTGCGGGAGATTCGACACGACCAACTGTCGACAGCGGCAGAGGCTGCCGAAAAGCCAACAGCCGCGTTGGGTTCAACGACGTCGTTTTCATCCACCTCTTCTACGGCTCCTGCAAGTCATTTGCCTTTTACATTGCTCCTTCAAGAGTCATCACGATGCTCTTATGTTTCATTGTCATCAACTTTATCTGGTGCATATTTTCCACGCAATCAATGA 3378 47.39 MPVNPWTLLSSILILCFSALFLFPFTASAINEQGQALLSWKLSLNDSNKVLSNWDPNNETPCKWFGITCNKNRQVIEVIVKNVNLPGELPWNFSSLLSLNKLVFSGVNLTGSIPKEIGVLTQLQSLDLSGNGFTGEIPSEICALLNLQQLYLNSNLLDGSIPAGIGNLTNLKELILYDNQLSGEIPVSIGNLKQIEVIRAGGNKNLHGSLPEEIGNCSNLVILGLAETSISGVIPASLGRLKKLQTLAIYSALLSGQIPHELGDCTELQNLYLYENSISGSIPSSLGRLQNLESLLLWQNNLVGVIPPELGKCEQLLVIDVSINSLTGRIPSTFGDLTMLQELQLSSNQLSGEIPKEIANCSRITHIELDDNQFTGTIPSELGNLSNLTLLFLWQNQFEGNIPQTISNCRNLEAVDLSLNGLTGSIPTGIFQLKKLSKLLLLSNNLSGEIPPAIGNCSSLLRFRASNNKLTGEIPPEIGDLKSLIFLDLGNNRLTGALPPEISGCRNLTFIDMHSNSLMKSLPEEFNQLSSLQFVDLSNNLIDGTPSFGSFNSLTKLVLSNNRFTGPIPIQIGSCLKLQFLDLSCNQLSGNIPSSLGKIPSLEIGLNLSLNRLSGEIPPEFANLDKLGSLDLSYNQLSGDLHILAELQNLVILNVSHNSFTGRVPETAFFAQLPVSVLSGNPDLCFASEKCYADDHGGGARHTLAARVAMIVLLCTAFALLLAAVYTILKDRHSRRGCFNGSRDEDSDAAMDSDLELGSDWEVTLYQKLDLSISDVIKSLTPANIIGRGKTGVVYRASISSGQTIAVKRFQSSEKHSAAAFSSEIATLARIRHRNIVRLVGWGANRKTKLLFYDYLGNGNLGAWLHEGNGRVGLDWECRFKIALGVAEGLGYLHHDCVPAILHRDVKAHNILLGDRFQACLADFGLARLVEDGSTGSPSSNPQFAGSYGYFAPEYGCMLRITEKSDVYSYGVVLLELITGKKPADSSFVEGQHVIQWVREHLKMKKDPISILDSRLQGQPDPQIQEIMQVLGISLLCTSDRAEDRPTMKDVAALLREIRHDQLSTAAEAAEKPTAALGSTTSFSSTSSTAPASHLPFTLLLQESSRCSYVSLSSTLSGAYFPRNQ 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34202758 34208740 - Sed0013605.1 Sed12g2458 733414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2458 1125 Gene3D Ribonuclease Inhibitor 425 696 IPR032675 -
Sed12g2458 1125 Gene3D Ribonuclease Inhibitor 224 328 IPR032675 -
Sed12g2458 1125 SUPERFAMILY L domain-like 359 687 - -
Sed12g2458 1125 Pfam Protein kinase domain 784 1051 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2458 1125 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Sed12g2458 1125 SMART LRR_typ_2 647 671 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 289 313 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 433 457 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 481 505 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 385 409 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 529 553 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 168 192 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 120 144 IPR003591 -
Sed12g2458 1125 SMART LRR_typ_2 337 361 IPR003591 -
Sed12g2458 1125 Pfam Leucine Rich Repeat 606 624 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 364 385 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 577 598 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 122 144 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 146 168 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 268 289 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Pfam Leucine Rich Repeat 483 505 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Gene3D Ribonuclease Inhibitor 145 223 IPR032675 -
Sed12g2458 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 856 1073 - -
Sed12g2458 1125 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 431 695 - -
Sed12g2458 1125 ProSitePatterns Serine/Threonine protein kinases active-site signature. 901 913 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2458 1125 Gene3D Ribonuclease Inhibitor 32 144 IPR032675 -
Sed12g2458 1125 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524(InterPro)
Sed12g2458 1125 Gene3D Phosphorylase Kinase; domain 1 760 855 - -
Sed12g2458 1125 MobiDBLite consensus disorder prediction 1065 1089 - -
Sed12g2458 1125 SUPERFAMILY Protein kinase-like (PK-like) 771 1055 IPR011009 -
Sed12g2458 1125 MobiDBLite consensus disorder prediction 1075 1089 - -
Sed12g2458 1125 ProSiteProfiles Protein kinase domain profile. 780 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2458 1125 SMART serkin_6 780 1075 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2458 1125 Gene3D Ribonuclease Inhibitor 329 424 IPR032675 -
Sed12g2458 1125 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 SUPERFAMILY L domain-like 51 398 - -
Sed12g2458 1125 PANTHER OS04G0122200 PROTEIN 47 204 IPR051809 -
Sed12g2458 1125 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515(InterPro)
Sed12g2458 1125 Gene3D Transferase(Phosphotransferase) domain 1 856 1080 - -
Sed12g2458 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 204 427 - -
Sed12g2458 1125 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 30 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2765 Sed-Chr7:42685689 Sed12g2458 Sed-Chr12:34202758 1.20E-90 dispersed
Sed12g0413 Sed-Chr12:2490362 Sed12g2458 Sed-Chr12:34202758 3.90E-100 dispersed
Sed12g2458 Sed-Chr12:34202758 Sed14g0971 Sed-Chr14:18940819 2.10E-74 dispersed
Sed01g1631 Sed-Chr1:11874397 Sed12g2458 Sed-Chr12:34202758 2.90E-20 wgd
Sed12g2458 Sed-Chr12:34202758 Sed08g0096 Sed-Chr8:577454 5.40E-248 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80054 PF00069 Pkinase 2.00E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2458 - - - 0.0