Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2460 ATGGAGGGCGCGAGAGAATTCGGTTCCGATGAATTGCAGAATAGTGATTGCTCGTTCGTTTGGGATGAGAAATCTCAGCTTTACTTCCATTCCAGTAGTGGATTTTATCACGATCCTGTTGCTGAATGGTACTATAGCAGTCGAGATGGTTGCTATTACAAATTTGAAAACGGAAGCTATGTTCTTCTTCAGTCAAATGAGCATGATGAACAATACAATGTGGATTCTGATAATCCTGTTAATGGCGAACCACGTAGACAAGTTTGTAATATCGGCAGTGAGGATCGCTCTTCATTTGAGGCCAATGAACTTGATGATTCTAAATATAGAGGAAGTGAAGGAGATGGACTACCGTTAGGACAAACAGAGGAGGGCATTAATGAGGATGAGAATCCTCCTACATCTTTGTGGTTAGAAGATACGCTTATTGATCTTTTTTTGTCCGGTTATTCAAATTCGGAAGTCGTAGCCAACAATGACTACGTGTCACCTACGCCTTCAACGACTAATGAGGCTAATAACTTCCTTTCATCAAGTGATGGCTATGTTGATACACAAAGGATTGAAGGTGAATTGCTGCAGAATGAAAACCATGCATTATTGAATTCTAGTGGAGGAGTATTAGATGGAACAGGCTATGATGATACTCAGAGGATGGATGGTGAATGGTTTCAAGACGTAAATCATACTATATATCCAGGCGAAAGTGTGTTAGATGGAGAAGGGGTTTCCACGGAGGAGGATAACTGGAAAGCTCAGTATGGTCAAGTCACAGATTATGGGGAAGAAACAATTCCCAAACTCTCTGTCGTGGACATCTGGGACTGGTCGACAGTCTCGGAGTCCAGGACAGGTGGAAAGGGCACGGTTACGAGGTTGGTTGGGAAACTGGTGAGAAAGTCCGCAAAGCTTCATCCTTCAGTTCCTTCAAATGGGGCTCTTCTTAAAACAGCTCCAATATGTGAAGTGCATTTAGATTTGGTACGAGTTGCGACCGGTAAAATTTATAAGTTACACAGTCCGAGTAAGAAATATTTGACGTCCATGACAACTTTTGATTCATCCAACCCTACAAAAGACTGGGGCTTTCCTGATTTATTAGATAGGCCAACTGATCTTGCTAATAACCAAACAAGGGTTGCAAGCAGCCATGCTCTGTCTACGTCGGTAGATAACCTCTCCACGGCCGAACCGTGTTCAAGCCAAAATCAATATAGAGATAGAGCTTCAGAGAGGAGAATCCTTCATGGTGGTTTCGGGATAGGTCCGGGACAGAAGAATTCAGCTTTTGATCGTGACGATCTAACATCGTCACCCCGTTCTGGCTGTTTGGAGAGCACTGCAGCTGAAGCATTGAATATTTCATTTGGAGCTGGCAGTTACGCACGAAAAATCTTAAAAAGCATGGGGTGGAAAGAGGGGGAGGGTCTTGGCAACAGCACGAAGGGCATGCTAGAACCACTTCAAGCTGTTGGGAATATTGGAAATGCTGGATTAGGATGGCCTCAGGGGATAAGAAAAACTCAACATTAA 1533 43.44 MEGAREFGSDELQNSDCSFVWDEKSQLYFHSSSGFYHDPVAEWYYSSRDGCYYKFENGSYVLLQSNEHDEQYNVDSDNPVNGEPRRQVCNIGSEDRSSFEANELDDSKYRGSEGDGLPLGQTEEGINEDENPPTSLWLEDTLIDLFLSGYSNSEVVANNDYVSPTPSTTNEANNFLSSSDGYVDTQRIEGELLQNENHALLNSSGGVLDGTGYDDTQRMDGEWFQDVNHTIYPGESVLDGEGVSTEEDNWKAQYGQVTDYGEETIPKLSVVDIWDWSTVSESRTGGKGTVTRLVGKLVRKSAKLHPSVPSNGALLKTAPICEVHLDLVRVATGKIYKLHSPSKKYLTSMTTFDSSNPTKDWGFPDLLDRPTDLANNQTRVASSHALSTSVDNLSTAEPCSSQNQYRDRASERRILHGGFGIGPGQKNSAFDRDDLTSSPRSGCLESTAAEALNISFGAGSYARKILKSMGWKEGEGLGNSTKGMLEPLQAVGNIGNAGLGWPQGIRKTQH 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34219986 34224640 - Sed0005220.1 Sed12g2460 733416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2460 510 ProSiteProfiles G-patch domain profile. 458 504 IPR000467 GO:0003676(InterPro)
Sed12g2460 510 PANTHER RNA-BINDING PROTEIN 9 381 - GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005634(PANTHER)
Sed12g2460 510 MobiDBLite consensus disorder prediction 91 133 - -
Sed12g2460 510 SMART G-patch_5 456 502 IPR000467 GO:0003676(InterPro)
Sed12g2460 510 Pfam G-patch domain 461 500 IPR000467 GO:0003676(InterPro)
Sed12g2460 510 MobiDBLite consensus disorder prediction 98 112 - -
Sed12g2460 510 CDD OCRE 18 59 - -
Sed12g2460 510 Pfam OCRE domain 16 61 IPR041591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2460 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g797 . . . . . . . . . . Cma10g00109 . Car10g00098 . Sed12g2460 . . Bhi02g00494 Tan09g2285 Cmetu02g1933 . Hepe09g0222 . . Cla06g01684 Cam06g1871 Cec06g1920 Cco06g1925 Clacu06g1826 Cmu06g1769 Cre06g2585 . . Cone13ag0159 . . . . . . Blo15g00259 . . Bpe07g00853 . . . . Cmo10g00113 . . . . . . Cpe18g00856 . . . . . . . . . . . . . . Lsi06g01577 Csa01g00126 Chy02g02600 Cme02g01997
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008649 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 31