Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2463 ATGGCATCATCAAGTTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCTGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAGAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTGACCAAGCTGCTTAATGAGCTTCTGCCCCACCAAAGAGAGGATGCAGTCAACTCTCTAGCCTACGAGGCCGAGGCTCGTGTCCGAGACCCGGTCTACGGCTGCGTCGGAGCCATCTCGTTCCTCCAAAGGCAAATCCAAAGGCTCCAGAAGGAACTCGACGCTGCAAACTCCGACCTAATTCGGTTCGCTTGCAACGAGATCCCTAATACGGGACCGAGTCATGTGGTTCAGCACATCCCGACCCTTCGCCCGAGGGCGTTTGATCAGTATAACACAAGTGGATATTATAATCAACATCTTCCTGCTTTTAATCCCATGGCTTACTCAATGCCTTGGAATGAAAACTCTTCAGGAAATAACATCAATGGAGGAGGAGGGGATGGTAATATATGA 546 48.72 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQIQRLQKELDAANSDLIRFACNEIPNTGPSHVVQHIPTLRPRAFDQYNTSGYYNQHLPAFNPMAYSMPWNENSSGNNINGGGGDGNI 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34257423 34260271 - Sed0002485.1 Sed12g2463 733419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2463 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 120 - -
Sed12g2463 181 Coils Coil 89 116 - -
Sed12g2463 181 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Sed12g2463 181 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0080 Sed-Chr1:743315 Sed12g2463 Sed-Chr12:34257423 1.30E-40 dispersed
Sed05g3367 Sed-Chr5:42875651 Sed12g2463 Sed-Chr12:34257423 4.50E-41 dispersed
Sed08g1405 Sed-Chr8:28698955 Sed12g2463 Sed-Chr12:34257423 1.90E-48 dispersed
Sed08g2530 Sed-Chr8:38024923 Sed12g2463 Sed-Chr12:34257423 4.20E-51 dispersed
Sed09g0109 Sed-Chr9:822546 Sed12g2463 Sed-Chr12:34257423 6.00E-29 dispersed
Sed09g0110 Sed-Chr9:856195 Sed12g2463 Sed-Chr12:34257423 9.80E-26 dispersed
Sed10g0092 Sed-Chr10:575299 Sed12g2463 Sed-Chr12:34257423 5.10E-31 dispersed
Sed11g2121 Sed-Chr11:35104592 Sed12g2463 Sed-Chr12:34257423 1.40E-33 dispersed
Sed11g2143 Sed-Chr11:35276261 Sed12g2463 Sed-Chr12:34257423 1.70E-21 dispersed
Sed12g2463 Sed-Chr12:34257423 Sed13g0172 Sed-Chr13:1112161 1.20E-24 dispersed
Sed01g1628 Sed-Chr1:11844777 Sed12g2463 Sed-Chr12:34257423 2.40E-36 wgd
Sed12g2463 Sed-Chr12:34257423 Sed06g0520 Sed-Chr6:4546939 2.40E-57 wgd
Sed12g2463 Sed-Chr12:34257423 Sed08g0088 Sed-Chr8:496474 3.50E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40306 PF03195 LOB 2.50E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2463 - - - 0.0