Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2475 ATGGAAGCTGGGAGTAGATTCTACTCTGCTACGGATGAGTTCAGATTGGAACCCAAATGGTTGGTTGATCCAAAACATCTCTTTGTTGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTATGAGGGCAAATATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACGGCTGATGAGGTATTGAAGAAAGAAGCTCGGTTTGCTCGAGAGGTTGCTATGCTGTCTAAAGTGCAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACTGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGCCCACGGTGCTTGGACACGCATGTGGCGGTTGGTTTCGCGCTAGATATTGCTCGTGCTATGGAATGCCTGCACTCTCATGGCATCATACACCGTGATCTGAAACCAGAGAACCTACTGTTGACTGCTGATCATAAAACAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCGTTGACAGAGATGATGACAGCGGAGACGGGGACCTACCGTTGGATGGCTCCAGAGTTGTACAGCACTGTGACACTAAGGCAAGGGGAGAAGAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTGTTATGGGAACTTCTACACAACAAGCTGCCATTTGAAGGCATGTCAAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCTAGCGCAGATAACCTTCCGGATGAACTAGCCATCATACTAACATCATGCTGGCAAGAGGATGCAAATGCTCGTCCAAACTTCACCCAAATTATCCAAACACTACTCAATTACCTTTACACCATTGCTCCACCCGAGCCCATGATTCCTTCCCGAGTCTTCACTTCTGAGAATGCCGTGTTTCCTCCCGAGTCTCCCGGAACAAGCTCACTGATGGCAGTCCGTGATGATTCAGGGGACACTCCAAAAGCTAAAATGGAAAATAAGTTCAGAGGTTGTTTTTTCTGCACCAATGACTGTTACTAA 1062 45.1 MEAGSRFYSATDEFRLEPKWLVDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVLKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTHVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSADNLPDELAIILTSCWQEDANARPNFTQIIQTLLNYLYTIAPPEPMIPSRVFTSENAVFPPESPGTSSLMAVRDDSGDTPKAKMENKFRGCFFCTNDCY 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34347505 34351235 + Sed0027372.1 Sed12g2475 733431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2475 353 Pfam Protein tyrosine and serine/threonine kinase 32 287 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524(InterPro)
Sed12g2475 353 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 SMART serkin_6 27 288 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 PANTHER SERINE-THREONINE PROTEIN KINASE 23 288 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed12g2475 353 Gene3D Transferase(Phosphotransferase) domain 1 108 295 - -
Sed12g2475 353 SUPERFAMILY Protein kinase-like (PK-like) 19 315 IPR011009 -
Sed12g2475 353 CDD STKc_MAP3K-like 33 287 - -
Sed12g2475 353 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Sed12g2475 353 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g2475 353 FunFam Kinase suppressor of Ras 1 16 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0116 Sed-Chr3:718063 Sed12g2475 Sed-Chr12:34347505 3.90E-144 dispersed
Sed04g1110 Sed-Chr4:21286536 Sed12g2475 Sed-Chr12:34347505 2.60E-114 dispersed
Sed04g1111 Sed-Chr4:21286536 Sed12g2475 Sed-Chr12:34347505 4.50E-92 dispersed
Sed08g1415 Sed-Chr8:28795625 Sed12g2475 Sed-Chr12:34347505 4.00E-157 dispersed
Sed12g2475 Sed-Chr12:34347505 Sed14g1314 Sed-Chr14:22010268 1.50E-58 dispersed
Sed12g2475 Sed-Chr12:34347505 Sed12g2476 Sed-Chr12:34347505 1.30E-160 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80055 PF07714 PK_Tyr_Ser-Thr 4.70E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2475 - - - 0.0